Hb_010447_020

Information

Type -
Description -
Location Contig10447: 26246-33296
Sequence    

Annotation

kegg
ID pda:103699060
description uncharacterized LOC103699060
nr
ID XP_012482884.1
description PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061EV23
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023017 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010447_020 0.0 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
2 Hb_010565_020 0.2329548266 - - -
3 Hb_033926_010 0.2375904011 - - -
4 Hb_003772_020 0.2551398182 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
5 Hb_012107_070 0.2580675972 - - -
6 Hb_006230_040 0.265111421 - - kinase, putative [Ricinus communis]
7 Hb_055339_010 0.2699313937 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
8 Hb_036693_010 0.279764293 - - -
9 Hb_006816_340 0.2812440998 - - -
10 Hb_009372_010 0.2844711239 - - -
11 Hb_010315_070 0.2845259686 - - -
12 Hb_097433_020 0.2866391948 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_005517_010 0.2884028314 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
14 Hb_005155_020 0.2959316908 - - -
15 Hb_008203_020 0.2971770394 - - protein kinase, putative [Ricinus communis]
16 Hb_163508_010 0.2974965657 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
17 Hb_007223_010 0.3004926897 - - conserved hypothetical protein [Ricinus communis]
18 Hb_018118_020 0.3005658978 - - unnamed protein product [Vitis vinifera]
19 Hb_001114_230 0.3006778282 - - -
20 Hb_007188_060 0.303648878 - - -

Gene co-expression network

sample Hb_010447_020 Hb_010447_020 Hb_010565_020 Hb_010565_020 Hb_010447_020--Hb_010565_020 Hb_033926_010 Hb_033926_010 Hb_010447_020--Hb_033926_010 Hb_003772_020 Hb_003772_020 Hb_010447_020--Hb_003772_020 Hb_012107_070 Hb_012107_070 Hb_010447_020--Hb_012107_070 Hb_006230_040 Hb_006230_040 Hb_010447_020--Hb_006230_040 Hb_055339_010 Hb_055339_010 Hb_010447_020--Hb_055339_010 Hb_164458_010 Hb_164458_010 Hb_010565_020--Hb_164458_010 Hb_006810_070 Hb_006810_070 Hb_010565_020--Hb_006810_070 Hb_010565_020--Hb_033926_010 Hb_003238_030 Hb_003238_030 Hb_010565_020--Hb_003238_030 Hb_000123_250 Hb_000123_250 Hb_010565_020--Hb_000123_250 Hb_000181_440 Hb_000181_440 Hb_033926_010--Hb_000181_440 Hb_005203_050 Hb_005203_050 Hb_033926_010--Hb_005203_050 Hb_007223_010 Hb_007223_010 Hb_033926_010--Hb_007223_010 Hb_009189_030 Hb_009189_030 Hb_033926_010--Hb_009189_030 Hb_009372_010 Hb_009372_010 Hb_033926_010--Hb_009372_010 Hb_082945_020 Hb_082945_020 Hb_033926_010--Hb_082945_020 Hb_000014_130 Hb_000014_130 Hb_003772_020--Hb_000014_130 Hb_032018_010 Hb_032018_010 Hb_003772_020--Hb_032018_010 Hb_000062_500 Hb_000062_500 Hb_003772_020--Hb_000062_500 Hb_007978_020 Hb_007978_020 Hb_003772_020--Hb_007978_020 Hb_041237_010 Hb_041237_010 Hb_003772_020--Hb_041237_010 Hb_005517_010 Hb_005517_010 Hb_012107_070--Hb_005517_010 Hb_036693_010 Hb_036693_010 Hb_012107_070--Hb_036693_010 Hb_028848_030 Hb_028848_030 Hb_012107_070--Hb_028848_030 Hb_005155_020 Hb_005155_020 Hb_012107_070--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_012107_070--Hb_061466_020 Hb_000214_090 Hb_000214_090 Hb_012107_070--Hb_000214_090 Hb_171619_010 Hb_171619_010 Hb_006230_040--Hb_171619_010 Hb_124961_010 Hb_124961_010 Hb_006230_040--Hb_124961_010 Hb_006230_040--Hb_005155_020 Hb_170532_010 Hb_170532_010 Hb_006230_040--Hb_170532_010 Hb_004994_130 Hb_004994_130 Hb_006230_040--Hb_004994_130 Hb_004570_050 Hb_004570_050 Hb_006230_040--Hb_004570_050 Hb_000997_010 Hb_000997_010 Hb_055339_010--Hb_000997_010 Hb_076233_020 Hb_076233_020 Hb_055339_010--Hb_076233_020 Hb_014361_050 Hb_014361_050 Hb_055339_010--Hb_014361_050 Hb_055339_010--Hb_004570_050 Hb_055339_010--Hb_036693_010 Hb_007188_060 Hb_007188_060 Hb_055339_010--Hb_007188_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0129553 0.0341377 0.0244798 0 0.0125455 0.0282921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00458515 0

CAGE analysis