Hb_124961_010

Information

Type -
Description -
Location Contig124961: 745-1038
Sequence    

Annotation

kegg
ID cit:102610147
description probable ribosome biogenesis protein RLP24-like
nr
ID KCW87416.1
description hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
swissprot
ID O22165
description Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1
trembl
ID A0A059DAJ8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03893 PE=4 SV=1
Gene Ontology
ID GO:0005840
description probable ribosome biogenesis protein rlp24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124961_010 0.0 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
2 Hb_170532_010 0.0451810011 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
3 Hb_171619_010 0.1042377136 - - protein binding protein, putative [Ricinus communis]
4 Hb_004570_050 0.1366977694 - - kinase, putative [Ricinus communis]
5 Hb_000160_150 0.16129991 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
6 Hb_007136_020 0.1623509064 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
7 Hb_101020_010 0.1811933302 - - -
8 Hb_003297_020 0.1815902095 - - unknown [Populus trichocarpa x Populus deltoides]
9 Hb_006816_340 0.1935069124 - - -
10 Hb_002783_010 0.198448226 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
11 Hb_001442_030 0.204406866 - - Peroxisome biogenesis factor [Medicago truncatula]
12 Hb_160203_010 0.2067245865 - - -
13 Hb_078568_010 0.2093467445 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
14 Hb_006230_040 0.2119822477 - - kinase, putative [Ricinus communis]
15 Hb_000152_670 0.2154474239 - - hypothetical protein VITISV_037603 [Vitis vinifera]
16 Hb_005155_020 0.2208999259 - - -
17 Hb_073973_030 0.2215555986 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
18 Hb_000169_190 0.2249703267 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
19 Hb_000258_320 0.2250185605 - - -
20 Hb_015354_010 0.2288334768 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_124961_010 Hb_124961_010 Hb_170532_010 Hb_170532_010 Hb_124961_010--Hb_170532_010 Hb_171619_010 Hb_171619_010 Hb_124961_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_124961_010--Hb_004570_050 Hb_000160_150 Hb_000160_150 Hb_124961_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_124961_010--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_124961_010--Hb_101020_010 Hb_170532_010--Hb_171619_010 Hb_170532_010--Hb_004570_050 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_171619_010--Hb_000160_150 Hb_003297_020 Hb_003297_020 Hb_171619_010--Hb_003297_020 Hb_171619_010--Hb_101020_010 Hb_006230_040 Hb_006230_040 Hb_171619_010--Hb_006230_040 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_002708_020 Hb_002708_020 Hb_000160_150--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_000160_150--Hb_027402_090 Hb_008246_030 Hb_008246_030 Hb_000160_150--Hb_008246_030 Hb_002686_330 Hb_002686_330 Hb_000160_150--Hb_002686_330 Hb_007136_020--Hb_003297_020 Hb_007136_020--Hb_101020_010 Hb_007136_020--Hb_170532_010 Hb_007136_020--Hb_006816_340 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_101020_010--Hb_000160_150 Hb_101020_010--Hb_003297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4904.19 3742.48 6921.8 2146.83 3352.03 11414.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
876.722 1266.54 375.224 328.732 89.0353

CAGE analysis