Hb_004994_370

Information

Type -
Description -
Location Contig4994: 274018-277814
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45667: 274314-274699 , PASA_asmbl_45668: 274936-275247 , PASA_asmbl_45669: 275261-275526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_370 0.0 - - -
2 Hb_004550_070 0.2765514345 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_003915_040 0.2842860014 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
4 Hb_003940_050 0.2899041138 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
5 Hb_000018_050 0.3259448818 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
6 Hb_001488_260 0.3298064733 - - Alpha-2-macroglobulin [Gossypium arboreum]
7 Hb_000754_050 0.3316594734 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_002243_070 0.3400232264 - - sodium-bile acid cotransporter, putative [Ricinus communis]
9 Hb_093824_010 0.3432164659 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
10 Hb_173121_010 0.3441084896 - - -
11 Hb_145157_010 0.3502055552 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
12 Hb_000148_010 0.3535552713 - - -
13 Hb_007904_010 0.3561294297 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_001733_040 0.3644012913 - - PREDICTED: flowering time control protein FCA isoform X2 [Jatropha curcas]
15 Hb_000296_080 0.3644178638 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
16 Hb_012753_070 0.3646744787 - - hypothetical protein VITISV_033646 [Vitis vinifera]
17 Hb_001818_110 0.3651793134 - - -
18 Hb_000922_210 0.3668606459 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
19 Hb_002217_290 0.3674498056 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
20 Hb_067069_010 0.3683516749 - - hypothetical protein JCGZ_11524 [Jatropha curcas]

Gene co-expression network

sample Hb_004994_370 Hb_004994_370 Hb_004550_070 Hb_004550_070 Hb_004994_370--Hb_004550_070 Hb_003915_040 Hb_003915_040 Hb_004994_370--Hb_003915_040 Hb_003940_050 Hb_003940_050 Hb_004994_370--Hb_003940_050 Hb_000018_050 Hb_000018_050 Hb_004994_370--Hb_000018_050 Hb_001488_260 Hb_001488_260 Hb_004994_370--Hb_001488_260 Hb_000754_050 Hb_000754_050 Hb_004994_370--Hb_000754_050 Hb_004550_070--Hb_003915_040 Hb_017604_030 Hb_017604_030 Hb_004550_070--Hb_017604_030 Hb_093824_010 Hb_093824_010 Hb_004550_070--Hb_093824_010 Hb_016748_010 Hb_016748_010 Hb_004550_070--Hb_016748_010 Hb_001773_010 Hb_001773_010 Hb_004550_070--Hb_001773_010 Hb_000742_150 Hb_000742_150 Hb_003915_040--Hb_000742_150 Hb_032705_020 Hb_032705_020 Hb_003915_040--Hb_032705_020 Hb_000148_010 Hb_000148_010 Hb_003915_040--Hb_000148_010 Hb_007083_040 Hb_007083_040 Hb_003915_040--Hb_007083_040 Hb_145157_010 Hb_145157_010 Hb_003915_040--Hb_145157_010 Hb_001390_020 Hb_001390_020 Hb_003940_050--Hb_001390_020 Hb_022958_010 Hb_022958_010 Hb_003940_050--Hb_022958_010 Hb_090530_010 Hb_090530_010 Hb_003940_050--Hb_090530_010 Hb_078477_060 Hb_078477_060 Hb_003940_050--Hb_078477_060 Hb_002475_150 Hb_002475_150 Hb_003940_050--Hb_002475_150 Hb_037790_010 Hb_037790_010 Hb_000018_050--Hb_037790_010 Hb_007904_010 Hb_007904_010 Hb_000018_050--Hb_007904_010 Hb_005822_030 Hb_005822_030 Hb_000018_050--Hb_005822_030 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_019617_010 Hb_019617_010 Hb_000018_050--Hb_019617_010 Hb_000703_300 Hb_000703_300 Hb_001488_260--Hb_000703_300 Hb_007313_060 Hb_007313_060 Hb_001488_260--Hb_007313_060 Hb_002276_070 Hb_002276_070 Hb_001488_260--Hb_002276_070 Hb_000463_030 Hb_000463_030 Hb_001488_260--Hb_000463_030 Hb_004459_070 Hb_004459_070 Hb_001488_260--Hb_004459_070 Hb_003038_150 Hb_003038_150 Hb_001488_260--Hb_003038_150 Hb_001484_080 Hb_001484_080 Hb_000754_050--Hb_001484_080 Hb_000296_080 Hb_000296_080 Hb_000754_050--Hb_000296_080 Hb_005588_110 Hb_005588_110 Hb_000754_050--Hb_005588_110 Hb_000402_170 Hb_000402_170 Hb_000754_050--Hb_000402_170 Hb_036790_120 Hb_036790_120 Hb_000754_050--Hb_036790_120 Hb_000977_270 Hb_000977_270 Hb_000754_050--Hb_000977_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0597308 0 0.022499 0 0.0580102 0.0364347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.162148 0 0.0437755 0.325038

CAGE analysis