Hb_002471_300

Information

Type -
Description -
Location Contig2471: 307203-309330
Sequence    

Annotation

kegg
ID tcc:TCM_011273
description Small nuclear ribonucleoprotein family protein
nr
ID XP_012072349.1
description PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Jatropha curcas]
swissprot
ID Q18786
description Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1
trembl
ID A0A061EGD1
description Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_011273 PE=4 SV=1
Gene Ontology
ID GO:0019013
description small nuclear ribonucleoprotein sm d2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25683: 306529-307202 , PASA_asmbl_25684: 307970-308302 , PASA_asmbl_25685: 308400-309418 , PASA_asmbl_25686: 306512-309352
cDNA
(Sanger)
(ID:Location)		 015_K16.ab1: 306512-309344 , 044_C21.ab1: 306512-309350 , 045_F03.ab1: 306512-309350

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_300 0.0 - - PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Jatropha curcas]
2 Hb_000594_050 0.1219618697 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
3 Hb_054745_010 0.1311780167 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001575_070 0.1313032443 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
5 Hb_000160_060 0.1317033361 - - unknown [Populus trichocarpa]
6 Hb_005895_030 0.1379076114 - - PREDICTED: uncharacterized protein LOC105643388 [Jatropha curcas]
7 Hb_000181_130 0.1423466539 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001188_070 0.1431812022 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
9 Hb_000074_080 0.1443152975 - - unknown [Populus trichocarpa]
10 Hb_000690_190 0.1448827932 - - 40S ribosomal protein S7, putative [Ricinus communis]
11 Hb_024847_010 0.1461367729 - - UPF0586 C9orf41-like protein [Medicago truncatula]
12 Hb_000768_210 0.1470657168 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
13 Hb_163950_030 0.1472497985 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
14 Hb_003416_010 0.1472658648 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
15 Hb_002375_040 0.1473052073 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
16 Hb_000621_010 0.1473918222 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
17 Hb_001124_020 0.1474694605 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
18 Hb_001191_110 0.1487856277 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
19 Hb_000676_080 0.149339651 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
20 Hb_001935_130 0.1506089138 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_300 Hb_002471_300 Hb_000594_050 Hb_000594_050 Hb_002471_300--Hb_000594_050 Hb_054745_010 Hb_054745_010 Hb_002471_300--Hb_054745_010 Hb_001575_070 Hb_001575_070 Hb_002471_300--Hb_001575_070 Hb_000160_060 Hb_000160_060 Hb_002471_300--Hb_000160_060 Hb_005895_030 Hb_005895_030 Hb_002471_300--Hb_005895_030 Hb_000181_130 Hb_000181_130 Hb_002471_300--Hb_000181_130 Hb_000594_050--Hb_000181_130 Hb_003750_050 Hb_003750_050 Hb_000594_050--Hb_003750_050 Hb_000107_230 Hb_000107_230 Hb_000594_050--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_000594_050--Hb_006588_170 Hb_002811_180 Hb_002811_180 Hb_000594_050--Hb_002811_180 Hb_002641_060 Hb_002641_060 Hb_000594_050--Hb_002641_060 Hb_004157_100 Hb_004157_100 Hb_054745_010--Hb_004157_100 Hb_000676_080 Hb_000676_080 Hb_054745_010--Hb_000676_080 Hb_054745_010--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_054745_010--Hb_006153_070 Hb_054745_010--Hb_000594_050 Hb_002205_210 Hb_002205_210 Hb_054745_010--Hb_002205_210 Hb_024847_010 Hb_024847_010 Hb_001575_070--Hb_024847_010 Hb_004060_020 Hb_004060_020 Hb_001575_070--Hb_004060_020 Hb_001252_130 Hb_001252_130 Hb_001575_070--Hb_001252_130 Hb_009694_010 Hb_009694_010 Hb_001575_070--Hb_009694_010 Hb_001205_310 Hb_001205_310 Hb_001575_070--Hb_001205_310 Hb_082821_010 Hb_082821_010 Hb_001575_070--Hb_082821_010 Hb_005054_060 Hb_005054_060 Hb_000160_060--Hb_005054_060 Hb_000160_060--Hb_009694_010 Hb_005731_050 Hb_005731_050 Hb_000160_060--Hb_005731_050 Hb_000111_380 Hb_000111_380 Hb_000160_060--Hb_000111_380 Hb_000562_030 Hb_000562_030 Hb_000160_060--Hb_000562_030 Hb_000329_200 Hb_000329_200 Hb_000160_060--Hb_000329_200 Hb_002687_130 Hb_002687_130 Hb_005895_030--Hb_002687_130 Hb_000608_250 Hb_000608_250 Hb_005895_030--Hb_000608_250 Hb_000170_210 Hb_000170_210 Hb_005895_030--Hb_000170_210 Hb_003401_050 Hb_003401_050 Hb_005895_030--Hb_003401_050 Hb_163950_030 Hb_163950_030 Hb_005895_030--Hb_163950_030 Hb_000690_130 Hb_000690_130 Hb_005895_030--Hb_000690_130 Hb_009328_020 Hb_009328_020 Hb_000181_130--Hb_009328_020 Hb_000621_010 Hb_000621_010 Hb_000181_130--Hb_000621_010 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_065500_060 Hb_065500_060 Hb_000181_130--Hb_065500_060 Hb_008847_030 Hb_008847_030 Hb_000181_130--Hb_008847_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3162 7.89535 33.1405 30.2198 28.0405 50.3759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.396 42.2644 14.2351 19.6343 20.5645

CAGE analysis