Hb_004934_120

Information

Type -
Description -
Location Contig4934: 79971-81890
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_120 0.0 - - -
2 Hb_001408_060 0.2003126235 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
3 Hb_003813_020 0.210478696 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
4 Hb_021079_010 0.2161125156 - - PREDICTED: histone H2B-like [Populus euphratica]
5 Hb_000191_080 0.2232837763 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
6 Hb_006738_020 0.2255048574 - - hypothetical protein VITISV_010510 [Vitis vinifera]
7 Hb_001240_010 0.2295687845 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
8 Hb_003181_060 0.231190294 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
9 Hb_000107_150 0.2318686287 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
10 Hb_000392_550 0.2328386502 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_140627_010 0.2350404176 - - conserved hypothetical protein [Ricinus communis]
12 Hb_027472_100 0.2371842678 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
13 Hb_003688_070 0.2373866101 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
14 Hb_012022_170 0.2385778708 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
15 Hb_001755_030 0.2396521072 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
16 Hb_000984_240 0.2397572872 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
17 Hb_000510_030 0.2406512718 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
18 Hb_009252_060 0.2408346085 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
19 Hb_000156_210 0.2415433898 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
20 Hb_006059_020 0.2416606869 - - PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]

Gene co-expression network

sample Hb_004934_120 Hb_004934_120 Hb_001408_060 Hb_001408_060 Hb_004934_120--Hb_001408_060 Hb_003813_020 Hb_003813_020 Hb_004934_120--Hb_003813_020 Hb_021079_010 Hb_021079_010 Hb_004934_120--Hb_021079_010 Hb_000191_080 Hb_000191_080 Hb_004934_120--Hb_000191_080 Hb_006738_020 Hb_006738_020 Hb_004934_120--Hb_006738_020 Hb_001240_010 Hb_001240_010 Hb_004934_120--Hb_001240_010 Hb_001898_050 Hb_001898_050 Hb_001408_060--Hb_001898_050 Hb_000392_550 Hb_000392_550 Hb_001408_060--Hb_000392_550 Hb_020025_010 Hb_020025_010 Hb_001408_060--Hb_020025_010 Hb_001369_790 Hb_001369_790 Hb_001408_060--Hb_001369_790 Hb_000107_150 Hb_000107_150 Hb_001408_060--Hb_000107_150 Hb_008695_200 Hb_008695_200 Hb_001408_060--Hb_008695_200 Hb_001790_030 Hb_001790_030 Hb_003813_020--Hb_001790_030 Hb_007534_050 Hb_007534_050 Hb_003813_020--Hb_007534_050 Hb_000112_060 Hb_000112_060 Hb_003813_020--Hb_000112_060 Hb_000164_140 Hb_000164_140 Hb_003813_020--Hb_000164_140 Hb_001946_160 Hb_001946_160 Hb_003813_020--Hb_001946_160 Hb_158845_050 Hb_158845_050 Hb_003813_020--Hb_158845_050 Hb_021079_010--Hb_000392_550 Hb_027298_030 Hb_027298_030 Hb_021079_010--Hb_027298_030 Hb_002876_020 Hb_002876_020 Hb_021079_010--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_021079_010--Hb_003106_100 Hb_003181_060 Hb_003181_060 Hb_021079_010--Hb_003181_060 Hb_000210_060 Hb_000210_060 Hb_021079_010--Hb_000210_060 Hb_000156_210 Hb_000156_210 Hb_000191_080--Hb_000156_210 Hb_003688_070 Hb_003688_070 Hb_000191_080--Hb_003688_070 Hb_007632_170 Hb_007632_170 Hb_000191_080--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000191_080--Hb_019040_030 Hb_000162_120 Hb_000162_120 Hb_000191_080--Hb_000162_120 Hb_000500_050 Hb_000500_050 Hb_000191_080--Hb_000500_050 Hb_002872_050 Hb_002872_050 Hb_006738_020--Hb_002872_050 Hb_000056_070 Hb_000056_070 Hb_006738_020--Hb_000056_070 Hb_000072_200 Hb_000072_200 Hb_006738_020--Hb_000072_200 Hb_003050_280 Hb_003050_280 Hb_006738_020--Hb_003050_280 Hb_000457_290 Hb_000457_290 Hb_006738_020--Hb_000457_290 Hb_000208_180 Hb_000208_180 Hb_006738_020--Hb_000208_180 Hb_000403_070 Hb_000403_070 Hb_001240_010--Hb_000403_070 Hb_001240_010--Hb_000107_150 Hb_001575_060 Hb_001575_060 Hb_001240_010--Hb_001575_060 Hb_003050_250 Hb_003050_250 Hb_001240_010--Hb_003050_250 Hb_140627_010 Hb_140627_010 Hb_001240_010--Hb_140627_010 Hb_011457_050 Hb_011457_050 Hb_001240_010--Hb_011457_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.497799 0 2.24675 1.14057 0.189978 1.31638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.890849 5.59864 0.549709 1.66967 4.21876

CAGE analysis