Hb_177019_010

Information

Type -
Description -
Location Contig177019: 42-800
Sequence    

Annotation

kegg
ID tcc:TCM_004012
description hypothetical protein
nr
ID XP_007050276.1
description Uncharacterized protein TCM_004012 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DWP1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_004012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177019_010 0.0 - - Uncharacterized protein TCM_004012 [Theobroma cacao]
2 Hb_004076_040 0.2553481194 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000656_050 0.2750973388 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
4 Hb_004934_120 0.2916404667 - - -
5 Hb_007254_030 0.2921619267 - - kinase, putative [Ricinus communis]
6 Hb_000668_130 0.2922440685 - - -
7 Hb_002518_100 0.2930757636 - - -
8 Hb_012239_010 0.2942744997 - - -
9 Hb_002126_010 0.2986015531 - - predicted protein [Hordeum vulgare subsp. vulgare]
10 Hb_000094_030 0.3021844912 - - -
11 Hb_002235_100 0.304064701 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
12 Hb_001408_060 0.3105385923 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
13 Hb_001584_380 0.3122170665 - - PREDICTED: tropomyosin-like [Jatropha curcas]
14 Hb_003940_050 0.3139859652 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
15 Hb_034083_020 0.3156782579 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011794_100 0.3168216838 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
17 Hb_012022_170 0.3183514222 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
18 Hb_020025_010 0.3204550841 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
19 Hb_000560_040 0.3212776767 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_001159_010 0.3214845847 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_177019_010 Hb_177019_010 Hb_004076_040 Hb_004076_040 Hb_177019_010--Hb_004076_040 Hb_000656_050 Hb_000656_050 Hb_177019_010--Hb_000656_050 Hb_004934_120 Hb_004934_120 Hb_177019_010--Hb_004934_120 Hb_007254_030 Hb_007254_030 Hb_177019_010--Hb_007254_030 Hb_000668_130 Hb_000668_130 Hb_177019_010--Hb_000668_130 Hb_002518_100 Hb_002518_100 Hb_177019_010--Hb_002518_100 Hb_001369_760 Hb_001369_760 Hb_004076_040--Hb_001369_760 Hb_005684_010 Hb_005684_010 Hb_004076_040--Hb_005684_010 Hb_037281_010 Hb_037281_010 Hb_004076_040--Hb_037281_010 Hb_005428_040 Hb_005428_040 Hb_004076_040--Hb_005428_040 Hb_011310_090 Hb_011310_090 Hb_004076_040--Hb_011310_090 Hb_000186_310 Hb_000186_310 Hb_000656_050--Hb_000186_310 Hb_011139_050 Hb_011139_050 Hb_000656_050--Hb_011139_050 Hb_004088_050 Hb_004088_050 Hb_000656_050--Hb_004088_050 Hb_007472_020 Hb_007472_020 Hb_000656_050--Hb_007472_020 Hb_004502_010 Hb_004502_010 Hb_000656_050--Hb_004502_010 Hb_001408_060 Hb_001408_060 Hb_004934_120--Hb_001408_060 Hb_003813_020 Hb_003813_020 Hb_004934_120--Hb_003813_020 Hb_021079_010 Hb_021079_010 Hb_004934_120--Hb_021079_010 Hb_000191_080 Hb_000191_080 Hb_004934_120--Hb_000191_080 Hb_006738_020 Hb_006738_020 Hb_004934_120--Hb_006738_020 Hb_001240_010 Hb_001240_010 Hb_004934_120--Hb_001240_010 Hb_000416_030 Hb_000416_030 Hb_007254_030--Hb_000416_030 Hb_001098_030 Hb_001098_030 Hb_007254_030--Hb_001098_030 Hb_000523_110 Hb_000523_110 Hb_007254_030--Hb_000523_110 Hb_004648_110 Hb_004648_110 Hb_007254_030--Hb_004648_110 Hb_003687_220 Hb_003687_220 Hb_007254_030--Hb_003687_220 Hb_012098_090 Hb_012098_090 Hb_007254_030--Hb_012098_090 Hb_000668_130--Hb_003687_220 Hb_011794_100 Hb_011794_100 Hb_000668_130--Hb_011794_100 Hb_000668_130--Hb_000416_030 Hb_001226_190 Hb_001226_190 Hb_000668_130--Hb_001226_190 Hb_002000_120 Hb_002000_120 Hb_000668_130--Hb_002000_120 Hb_044653_070 Hb_044653_070 Hb_002518_100--Hb_044653_070 Hb_002085_050 Hb_002085_050 Hb_002518_100--Hb_002085_050 Hb_001365_010 Hb_001365_010 Hb_002518_100--Hb_001365_010 Hb_035834_010 Hb_035834_010 Hb_002518_100--Hb_035834_010 Hb_177343_010 Hb_177343_010 Hb_002518_100--Hb_177343_010 Hb_004710_020 Hb_004710_020 Hb_002518_100--Hb_004710_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.026393 0.0976709 0.0867016 0.0315722 0.106152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.227728 0 0.138527 0.227319

CAGE analysis