Hb_002085_050

Information

Type -
Description -
Location Contig2085: 89501-97377
Sequence    

Annotation

kegg
ID rcu:RCOM_0155170
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012064843.1
description PREDICTED: beta-galactosidase 8 [Jatropha curcas]
swissprot
ID Q9SCV4
description Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2
trembl
ID A0A067LHJ5
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_05537 PE=3 SV=1
Gene Ontology
ID GO:0005618
description beta-galactosidase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21590: 89604-97390 , PASA_asmbl_21592: 96608-96774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002085_050 0.0 - - PREDICTED: beta-galactosidase 8 [Jatropha curcas]
2 Hb_097495_010 0.1417255575 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
3 Hb_015531_020 0.1429705201 - - PREDICTED: uncharacterized protein LOC100267182 isoform X2 [Vitis vinifera]
4 Hb_009687_020 0.144407195 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
5 Hb_001369_100 0.1455781246 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
6 Hb_002759_120 0.1483547183 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000049_180 0.1488223504 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
8 Hb_000096_190 0.1514114362 - - unknown [Lotus japonicus]
9 Hb_000473_050 0.151513512 - - chromatin regulatory protein sir2, putative [Ricinus communis]
10 Hb_007904_060 0.1523612944 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
11 Hb_158092_100 0.153527641 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
12 Hb_032631_070 0.1548707294 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
13 Hb_002817_040 0.1568964215 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
14 Hb_004710_020 0.1580964505 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
15 Hb_000300_020 0.1591946181 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
16 Hb_003171_030 0.1619858106 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
17 Hb_000496_130 0.1623754084 - - PREDICTED: fructokinase-1 [Jatropha curcas]
18 Hb_121089_040 0.1633301261 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
19 Hb_000328_050 0.1637213542 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
20 Hb_189003_060 0.1646093488 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002085_050 Hb_002085_050 Hb_097495_010 Hb_097495_010 Hb_002085_050--Hb_097495_010 Hb_015531_020 Hb_015531_020 Hb_002085_050--Hb_015531_020 Hb_009687_020 Hb_009687_020 Hb_002085_050--Hb_009687_020 Hb_001369_100 Hb_001369_100 Hb_002085_050--Hb_001369_100 Hb_002759_120 Hb_002759_120 Hb_002085_050--Hb_002759_120 Hb_000049_180 Hb_000049_180 Hb_002085_050--Hb_000049_180 Hb_000585_110 Hb_000585_110 Hb_097495_010--Hb_000585_110 Hb_007441_310 Hb_007441_310 Hb_097495_010--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_097495_010--Hb_019654_020 Hb_001663_040 Hb_001663_040 Hb_097495_010--Hb_001663_040 Hb_097495_010--Hb_000049_180 Hb_021943_090 Hb_021943_090 Hb_097495_010--Hb_021943_090 Hb_000473_050 Hb_000473_050 Hb_015531_020--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_015531_020--Hb_004055_160 Hb_015531_020--Hb_009687_020 Hb_004710_020 Hb_004710_020 Hb_015531_020--Hb_004710_020 Hb_001348_090 Hb_001348_090 Hb_015531_020--Hb_001348_090 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_009687_020--Hb_004055_160 Hb_001269_500 Hb_001269_500 Hb_009687_020--Hb_001269_500 Hb_009687_020--Hb_000473_050 Hb_009079_050 Hb_009079_050 Hb_001369_100--Hb_009079_050 Hb_002817_040 Hb_002817_040 Hb_001369_100--Hb_002817_040 Hb_005563_010 Hb_005563_010 Hb_001369_100--Hb_005563_010 Hb_001628_120 Hb_001628_120 Hb_001369_100--Hb_001628_120 Hb_000096_190 Hb_000096_190 Hb_001369_100--Hb_000096_190 Hb_000139_300 Hb_000139_300 Hb_001369_100--Hb_000139_300 Hb_003752_090 Hb_003752_090 Hb_002759_120--Hb_003752_090 Hb_002759_120--Hb_000096_190 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_042083_040 Hb_042083_040 Hb_002759_120--Hb_042083_040 Hb_002759_120--Hb_158092_100 Hb_003994_080 Hb_003994_080 Hb_002759_120--Hb_003994_080 Hb_001976_030 Hb_001976_030 Hb_000049_180--Hb_001976_030 Hb_000049_180--Hb_001628_120 Hb_000049_160 Hb_000049_160 Hb_000049_180--Hb_000049_160 Hb_000049_180--Hb_007441_310 Hb_000049_180--Hb_000096_190 Hb_000049_180--Hb_042083_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93771 1.44328 25.7163 22.5818 7.45644 6.24967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12307 9.33765 5.51852 11.5229 37.8127

CAGE analysis