Hb_015531_020

Information

Type -
Description -
Location Contig15531: 20056-23234
Sequence    

Annotation

kegg
ID atr:s00125p00010700
description AMTR_s00125p00010700; hypothetical protein
nr
ID XP_010665471.1
description PREDICTED: uncharacterized protein LOC100267182 isoform X2 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0D2SP22
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G268700 PE=4 SV=1
Gene Ontology
ID GO:0009535
description encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13488: 19864-41814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015531_020 0.0 - - PREDICTED: uncharacterized protein LOC100267182 isoform X2 [Vitis vinifera]
2 Hb_000473_050 0.1368040773 - - chromatin regulatory protein sir2, putative [Ricinus communis]
3 Hb_004055_160 0.13806519 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
4 Hb_009687_020 0.1415694154 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
5 Hb_002085_050 0.1429705201 - - PREDICTED: beta-galactosidase 8 [Jatropha curcas]
6 Hb_004710_020 0.1442753374 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
7 Hb_001348_090 0.1538717701 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
8 Hb_006829_080 0.1560999815 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
9 Hb_189003_060 0.15616234 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002005_040 0.1564067735 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_158092_100 0.1588039188 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
12 Hb_000152_490 0.1608444502 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
13 Hb_001723_030 0.1609558491 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
14 Hb_002044_020 0.1627957537 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
15 Hb_000951_120 0.1627998292 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
16 Hb_000085_070 0.1633132875 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
17 Hb_006198_130 0.1665665857 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
18 Hb_031139_010 0.1666951491 - - PREDICTED: uncharacterized protein LOC105632403 isoform X1 [Jatropha curcas]
19 Hb_003549_140 0.1699560449 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_005618_080 0.1701353339 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_015531_020 Hb_015531_020 Hb_000473_050 Hb_000473_050 Hb_015531_020--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_015531_020--Hb_004055_160 Hb_009687_020 Hb_009687_020 Hb_015531_020--Hb_009687_020 Hb_002085_050 Hb_002085_050 Hb_015531_020--Hb_002085_050 Hb_004710_020 Hb_004710_020 Hb_015531_020--Hb_004710_020 Hb_001348_090 Hb_001348_090 Hb_015531_020--Hb_001348_090 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_000473_050--Hb_009687_020 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430 Hb_002005_040 Hb_002005_040 Hb_004055_160--Hb_002005_040 Hb_004055_160--Hb_000684_430 Hb_004055_160--Hb_009687_020 Hb_004055_160--Hb_006829_080 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_004055_160--Hb_001348_090 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_009687_020--Hb_158092_100 Hb_001269_500 Hb_001269_500 Hb_009687_020--Hb_001269_500 Hb_097495_010 Hb_097495_010 Hb_002085_050--Hb_097495_010 Hb_002085_050--Hb_009687_020 Hb_001369_100 Hb_001369_100 Hb_002085_050--Hb_001369_100 Hb_002759_120 Hb_002759_120 Hb_002085_050--Hb_002759_120 Hb_000049_180 Hb_000049_180 Hb_002085_050--Hb_000049_180 Hb_000496_130 Hb_000496_130 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_000454_100 Hb_000454_100 Hb_004710_020--Hb_000454_100 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_006006_060 Hb_006006_060 Hb_004710_020--Hb_006006_060 Hb_004710_020--Hb_001348_090 Hb_001348_090--Hb_002005_040 Hb_002374_450 Hb_002374_450 Hb_001348_090--Hb_002374_450 Hb_004242_170 Hb_004242_170 Hb_001348_090--Hb_004242_170 Hb_024677_010 Hb_024677_010 Hb_001348_090--Hb_024677_010 Hb_000441_050 Hb_000441_050 Hb_001348_090--Hb_000441_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23352 0.0921835 7.1979 4.6705 1.18668 2.71483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23103 1.3542 0.895761 2.38081 10.7856

CAGE analysis