Hb_000808_200

Information

Type transcription factor
Description TF Family: Orphans
Location Contig808: 216247-219949
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01100g
description POPTRDRAFT_570723; hypothetical protein
nr
ID XP_012089434.1
description PREDICTED: histidine kinase CKI1-like [Jatropha curcas]
swissprot
ID O22267
description Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
trembl
ID A0A067JV30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23237 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine kinase cki1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_200 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1-like [Jatropha curcas]
2 Hb_000011_040 0.2374319464 - - hypothetical protein JCGZ_24593 [Jatropha curcas]
3 Hb_000011_410 0.286480651 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000017_350 0.2871789515 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
5 Hb_003786_080 0.2878845479 - - electron transporter, putative [Ricinus communis]
6 Hb_008279_030 0.2992504058 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000367_250 0.3054631382 - - unnamed protein product [Vitis vinifera]
8 Hb_002498_160 0.3077719441 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
9 Hb_011004_050 0.3110485701 - - PREDICTED: kinesin-13A [Jatropha curcas]
10 Hb_001587_170 0.3129669121 - - hypothetical protein B456_010G223200, partial [Gossypium raimondii]
11 Hb_003271_040 0.3171861426 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
12 Hb_092703_010 0.3189199243 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
13 Hb_001386_090 0.3221033977 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
14 Hb_000567_400 0.3222727246 - - cytochrome P450 family protein [Populus trichocarpa]
15 Hb_005914_050 0.3240053767 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
16 Hb_007594_040 0.3276110489 - - calcium lipid binding protein, putative [Ricinus communis]
17 Hb_121089_050 0.3280910738 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000438_130 0.3286233982 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
19 Hb_114310_120 0.3321230909 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
20 Hb_001711_060 0.3332199995 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_200 Hb_000808_200 Hb_000011_040 Hb_000011_040 Hb_000808_200--Hb_000011_040 Hb_000011_410 Hb_000011_410 Hb_000808_200--Hb_000011_410 Hb_000017_350 Hb_000017_350 Hb_000808_200--Hb_000017_350 Hb_003786_080 Hb_003786_080 Hb_000808_200--Hb_003786_080 Hb_008279_030 Hb_008279_030 Hb_000808_200--Hb_008279_030 Hb_000367_250 Hb_000367_250 Hb_000808_200--Hb_000367_250 Hb_002085_050 Hb_002085_050 Hb_000011_040--Hb_002085_050 Hb_001369_100 Hb_001369_100 Hb_000011_040--Hb_001369_100 Hb_000152_490 Hb_000152_490 Hb_000011_040--Hb_000152_490 Hb_002817_040 Hb_002817_040 Hb_000011_040--Hb_002817_040 Hb_121089_050 Hb_121089_050 Hb_000011_040--Hb_121089_050 Hb_000096_190 Hb_000096_190 Hb_000011_040--Hb_000096_190 Hb_000011_410--Hb_008279_030 Hb_107495_040 Hb_107495_040 Hb_000011_410--Hb_107495_040 Hb_001606_060 Hb_001606_060 Hb_000011_410--Hb_001606_060 Hb_000025_610 Hb_000025_610 Hb_000011_410--Hb_000025_610 Hb_000069_710 Hb_000069_710 Hb_000011_410--Hb_000069_710 Hb_121881_010 Hb_121881_010 Hb_000011_410--Hb_121881_010 Hb_002498_160 Hb_002498_160 Hb_000017_350--Hb_002498_160 Hb_000789_120 Hb_000789_120 Hb_000017_350--Hb_000789_120 Hb_169209_010 Hb_169209_010 Hb_000017_350--Hb_169209_010 Hb_001124_190 Hb_001124_190 Hb_000017_350--Hb_001124_190 Hb_121089_040 Hb_121089_040 Hb_000017_350--Hb_121089_040 Hb_000473_050 Hb_000473_050 Hb_000017_350--Hb_000473_050 Hb_000035_210 Hb_000035_210 Hb_003786_080--Hb_000035_210 Hb_001638_310 Hb_001638_310 Hb_003786_080--Hb_001638_310 Hb_000438_130 Hb_000438_130 Hb_003786_080--Hb_000438_130 Hb_000977_170 Hb_000977_170 Hb_003786_080--Hb_000977_170 Hb_006487_040 Hb_006487_040 Hb_003786_080--Hb_006487_040 Hb_000802_050 Hb_000802_050 Hb_003786_080--Hb_000802_050 Hb_003813_180 Hb_003813_180 Hb_008279_030--Hb_003813_180 Hb_011004_050 Hb_011004_050 Hb_008279_030--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_008279_030--Hb_002662_040 Hb_006634_100 Hb_006634_100 Hb_008279_030--Hb_006634_100 Hb_004163_030 Hb_004163_030 Hb_008279_030--Hb_004163_030 Hb_001587_170 Hb_001587_170 Hb_000367_250--Hb_001587_170 Hb_003164_010 Hb_003164_010 Hb_000367_250--Hb_003164_010 Hb_000120_630 Hb_000120_630 Hb_000367_250--Hb_000120_630 Hb_000856_270 Hb_000856_270 Hb_000367_250--Hb_000856_270 Hb_004007_140 Hb_004007_140 Hb_000367_250--Hb_004007_140 Hb_000367_250--Hb_008279_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0440824 0.0210398 0.0116805 0.00537874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0104098 0.0199408 0 0.0222441

CAGE analysis