Hb_107495_040

Information

Type -
Description -
Location Contig107495: 49431-55891
Sequence    

Annotation

kegg
ID cit:102623338
description 12-oxophytodienoate reductase 2-like
nr
ID XP_006478217.1
description PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
swissprot
ID Q8GYB8
description 12-oxophytodienoate reductase 2 OS=Arabidopsis thaliana GN=OPR2 PE=1 SV=2
trembl
ID A0A067DIG5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015862mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02317: 49472-56258 , PASA_asmbl_02318: 49472-55413 , PASA_asmbl_02319: 55226-55526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107495_040 0.0 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
2 Hb_001606_060 0.128840726 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004223_050 0.146032975 - - hexokinase [Manihot esculenta]
4 Hb_000300_690 0.1549954049 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
5 Hb_002174_040 0.1554884364 - - DNAJ heat shock family protein [Theobroma cacao]
6 Hb_000359_310 0.1570947986 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
7 Hb_000352_120 0.1597483366 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
8 Hb_000300_200 0.1600149913 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
9 Hb_000136_140 0.1609691401 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
10 Hb_011671_080 0.165874394 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
11 Hb_024074_020 0.166334314 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
12 Hb_000359_290 0.1663556216 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
13 Hb_004754_050 0.1675855567 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
14 Hb_002351_030 0.1697612577 - - catalytic, putative [Ricinus communis]
15 Hb_000244_180 0.1698483422 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001512_040 0.1699749983 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
17 Hb_003935_060 0.1712572915 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
18 Hb_000566_070 0.1718896706 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001482_040 0.1723052513 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000069_710 0.1748006608 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]

Gene co-expression network

sample Hb_107495_040 Hb_107495_040 Hb_001606_060 Hb_001606_060 Hb_107495_040--Hb_001606_060 Hb_004223_050 Hb_004223_050 Hb_107495_040--Hb_004223_050 Hb_000300_690 Hb_000300_690 Hb_107495_040--Hb_000300_690 Hb_002174_040 Hb_002174_040 Hb_107495_040--Hb_002174_040 Hb_000359_310 Hb_000359_310 Hb_107495_040--Hb_000359_310 Hb_000352_120 Hb_000352_120 Hb_107495_040--Hb_000352_120 Hb_001606_060--Hb_002174_040 Hb_121881_010 Hb_121881_010 Hb_001606_060--Hb_121881_010 Hb_008566_040 Hb_008566_040 Hb_001606_060--Hb_008566_040 Hb_003935_060 Hb_003935_060 Hb_001606_060--Hb_003935_060 Hb_001102_020 Hb_001102_020 Hb_001606_060--Hb_001102_020 Hb_000127_140 Hb_000127_140 Hb_004223_050--Hb_000127_140 Hb_004754_050 Hb_004754_050 Hb_004223_050--Hb_004754_050 Hb_000721_030 Hb_000721_030 Hb_004223_050--Hb_000721_030 Hb_010931_130 Hb_010931_130 Hb_004223_050--Hb_010931_130 Hb_012258_010 Hb_012258_010 Hb_004223_050--Hb_012258_010 Hb_001195_060 Hb_001195_060 Hb_004223_050--Hb_001195_060 Hb_000056_040 Hb_000056_040 Hb_000300_690--Hb_000056_040 Hb_000690_160 Hb_000690_160 Hb_000300_690--Hb_000690_160 Hb_000599_180 Hb_000599_180 Hb_000300_690--Hb_000599_180 Hb_000046_040 Hb_000046_040 Hb_000300_690--Hb_000046_040 Hb_004884_070 Hb_004884_070 Hb_000300_690--Hb_004884_070 Hb_024836_010 Hb_024836_010 Hb_000300_690--Hb_024836_010 Hb_031527_110 Hb_031527_110 Hb_002174_040--Hb_031527_110 Hb_012573_050 Hb_012573_050 Hb_002174_040--Hb_012573_050 Hb_000181_350 Hb_000181_350 Hb_002174_040--Hb_000181_350 Hb_001663_040 Hb_001663_040 Hb_002174_040--Hb_001663_040 Hb_011224_100 Hb_011224_100 Hb_002174_040--Hb_011224_100 Hb_002184_090 Hb_002184_090 Hb_002174_040--Hb_002184_090 Hb_000370_020 Hb_000370_020 Hb_000359_310--Hb_000370_020 Hb_002289_060 Hb_002289_060 Hb_000359_310--Hb_002289_060 Hb_009661_030 Hb_009661_030 Hb_000359_310--Hb_009661_030 Hb_001946_180 Hb_001946_180 Hb_000359_310--Hb_001946_180 Hb_000062_540 Hb_000062_540 Hb_000359_310--Hb_000062_540 Hb_000256_150 Hb_000256_150 Hb_000359_310--Hb_000256_150 Hb_001004_070 Hb_001004_070 Hb_000352_120--Hb_001004_070 Hb_000352_120--Hb_000062_540 Hb_001936_130 Hb_001936_130 Hb_000352_120--Hb_001936_130 Hb_003206_090 Hb_003206_090 Hb_000352_120--Hb_003206_090 Hb_001269_330 Hb_001269_330 Hb_000352_120--Hb_001269_330 Hb_027380_220 Hb_027380_220 Hb_000352_120--Hb_027380_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13904 0.410176 2.85872 4.73196 2.15554 0.966385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.934547 1.73642 2.61101 0.517109 1.97252

CAGE analysis