Hb_001606_060

Information

Type -
Description -
Location Contig1606: 110291-112516
Sequence    

Annotation

kegg
ID rcu:RCOM_0549630
description hypothetical protein
nr
ID XP_002532284.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SJ81
description Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1
trembl
ID B9T215
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0549630 PE=4 SV=1
Gene Ontology
ID GO:0046658
description fasciclin-like arabinogalactan protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14376: 110631-112510 , PASA_asmbl_14377: 110438-112537 , PASA_asmbl_14378: 110816-112434
cDNA
(Sanger)
(ID:Location)		 013_I24.ab1: 110816-112039 , 027_D16.ab1: 110438-112031 , 028_N10.ab1: 110438-112028 , 031_C15.ab1: 110446-112037 , 040_E13.ab1: 110816-111939 , 043_D17.ab1: 110436-112085 , 053_N10.ab1: 110438-112081

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001606_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_107495_040 0.128840726 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
3 Hb_002174_040 0.137611203 - - DNAJ heat shock family protein [Theobroma cacao]
4 Hb_121881_010 0.137839225 - - hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
5 Hb_008566_040 0.1435588104 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
6 Hb_003935_060 0.147958562 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
7 Hb_001102_020 0.1483825125 - - solanesyl diphosphate synthase [Hevea brasiliensis]
8 Hb_004088_040 0.1517587629 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
9 Hb_000300_200 0.1544989904 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
10 Hb_000244_180 0.1544997366 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004223_050 0.1584673811 - - hexokinase [Manihot esculenta]
12 Hb_000359_290 0.158605328 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
13 Hb_001633_200 0.1590535654 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
14 Hb_000765_060 0.1607550394 - - Alcohol dehydrogenase-like 6 [Glycine soja]
15 Hb_000300_600 0.1617640437 - - tubulin alpha chain, putative [Ricinus communis]
16 Hb_000022_200 0.162773545 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
17 Hb_000721_030 0.1637754526 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
18 Hb_000920_010 0.1675346209 - - hypothetical protein PRUPE_ppa013940mg [Prunus persica]
19 Hb_000890_130 0.1693843243 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
20 Hb_000108_050 0.1702619939 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]

Gene co-expression network

sample Hb_001606_060 Hb_001606_060 Hb_107495_040 Hb_107495_040 Hb_001606_060--Hb_107495_040 Hb_002174_040 Hb_002174_040 Hb_001606_060--Hb_002174_040 Hb_121881_010 Hb_121881_010 Hb_001606_060--Hb_121881_010 Hb_008566_040 Hb_008566_040 Hb_001606_060--Hb_008566_040 Hb_003935_060 Hb_003935_060 Hb_001606_060--Hb_003935_060 Hb_001102_020 Hb_001102_020 Hb_001606_060--Hb_001102_020 Hb_004223_050 Hb_004223_050 Hb_107495_040--Hb_004223_050 Hb_000300_690 Hb_000300_690 Hb_107495_040--Hb_000300_690 Hb_107495_040--Hb_002174_040 Hb_000359_310 Hb_000359_310 Hb_107495_040--Hb_000359_310 Hb_000352_120 Hb_000352_120 Hb_107495_040--Hb_000352_120 Hb_031527_110 Hb_031527_110 Hb_002174_040--Hb_031527_110 Hb_012573_050 Hb_012573_050 Hb_002174_040--Hb_012573_050 Hb_000181_350 Hb_000181_350 Hb_002174_040--Hb_000181_350 Hb_001663_040 Hb_001663_040 Hb_002174_040--Hb_001663_040 Hb_011224_100 Hb_011224_100 Hb_002174_040--Hb_011224_100 Hb_002184_090 Hb_002184_090 Hb_002174_040--Hb_002184_090 Hb_001633_200 Hb_001633_200 Hb_121881_010--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_121881_010--Hb_000742_020 Hb_000057_110 Hb_000057_110 Hb_121881_010--Hb_000057_110 Hb_006829_060 Hb_006829_060 Hb_121881_010--Hb_006829_060 Hb_000684_030 Hb_000684_030 Hb_121881_010--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_121881_010--Hb_000200_300 Hb_000765_060 Hb_000765_060 Hb_008566_040--Hb_000765_060 Hb_008566_040--Hb_003935_060 Hb_000684_260 Hb_000684_260 Hb_008566_040--Hb_000684_260 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_002960_150 Hb_002960_150 Hb_008566_040--Hb_002960_150 Hb_000622_350 Hb_000622_350 Hb_008566_040--Hb_000622_350 Hb_001504_030 Hb_001504_030 Hb_003935_060--Hb_001504_030 Hb_000365_130 Hb_000365_130 Hb_003935_060--Hb_000365_130 Hb_001250_070 Hb_001250_070 Hb_003935_060--Hb_001250_070 Hb_000721_030 Hb_000721_030 Hb_003935_060--Hb_000721_030 Hb_003935_060--Hb_001102_020 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_001102_020--Hb_001504_030 Hb_001102_020--Hb_000721_030 Hb_001102_020--Hb_001250_070 Hb_000244_180 Hb_000244_180 Hb_001102_020--Hb_000244_180 Hb_003728_100 Hb_003728_100 Hb_001102_020--Hb_003728_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.9311 10.6148 105.596 142.698 36.1753 24.4502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.905 25.2796 74.3866 24.2096 78.0913

CAGE analysis