Hb_115031_030

Information

Type -
Description -
Location Contig115031: 8485-10673
Sequence    

Annotation

kegg
ID pop:POPTR_0013s134902
description hypothetical protein
nr
ID AGZ19166.1
description ribosomal protein S12 (chloroplast) [Camellia sinensis]
swissprot
ID Q14FB1
description 30S ribosomal protein S12, chloroplastic OS=Populus alba GN=rps12-A PE=3 SV=1
trembl
ID U5U7M4
description Ribosomal protein S12 OS=Camellia sinensis GN=rps12 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ribosomal protein s12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115031_030 0.0 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
2 Hb_145745_040 0.2435960071 - - Cell wall-associated hydrolase [Medicago truncatula]
3 Hb_126395_010 0.2472688656 - - hypothetical protein VITISV_043980 [Vitis vinifera]
4 Hb_002248_040 0.2748637251 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000331_050 0.2754896387 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
6 Hb_000088_150 0.280419188 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
7 Hb_003388_070 0.2845222197 - - 60S ribosomal protein L32A [Hevea brasiliensis]
8 Hb_000424_090 0.2847998002 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
9 Hb_000050_140 0.2992221369 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
10 Hb_000457_190 0.3186231343 - - -
11 Hb_005656_130 0.3236088409 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
12 Hb_003371_050 0.3266906188 - - conserved hypothetical protein [Ricinus communis]
13 Hb_020469_010 0.3299153062 - - -
14 Hb_000085_010 0.3346843349 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000505_070 0.3414970849 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
16 Hb_000603_270 0.3432276137 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
17 Hb_000608_150 0.344510049 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
18 Hb_000866_340 0.3464883993 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000505_050 0.3493121704 - - PREDICTED: heparanase-like protein 3 isoform X2 [Gossypium raimondii]
20 Hb_001221_200 0.3502453682 - - -

Gene co-expression network

sample Hb_115031_030 Hb_115031_030 Hb_145745_040 Hb_145745_040 Hb_115031_030--Hb_145745_040 Hb_126395_010 Hb_126395_010 Hb_115031_030--Hb_126395_010 Hb_002248_040 Hb_002248_040 Hb_115031_030--Hb_002248_040 Hb_000331_050 Hb_000331_050 Hb_115031_030--Hb_000331_050 Hb_000088_150 Hb_000088_150 Hb_115031_030--Hb_000088_150 Hb_003388_070 Hb_003388_070 Hb_115031_030--Hb_003388_070 Hb_000608_150 Hb_000608_150 Hb_145745_040--Hb_000608_150 Hb_003371_050 Hb_003371_050 Hb_145745_040--Hb_003371_050 Hb_145745_040--Hb_000331_050 Hb_000120_630 Hb_000120_630 Hb_145745_040--Hb_000120_630 Hb_145745_040--Hb_003388_070 Hb_000085_010 Hb_000085_010 Hb_145745_040--Hb_000085_010 Hb_126395_010--Hb_002248_040 Hb_126395_010--Hb_003388_070 Hb_005656_130 Hb_005656_130 Hb_126395_010--Hb_005656_130 Hb_007595_060 Hb_007595_060 Hb_126395_010--Hb_007595_060 Hb_001706_030 Hb_001706_030 Hb_126395_010--Hb_001706_030 Hb_002248_040--Hb_007595_060 Hb_011649_020 Hb_011649_020 Hb_002248_040--Hb_011649_020 Hb_000457_190 Hb_000457_190 Hb_002248_040--Hb_000457_190 Hb_002248_040--Hb_000331_050 Hb_000331_050--Hb_003371_050 Hb_000331_050--Hb_000120_630 Hb_002811_220 Hb_002811_220 Hb_000331_050--Hb_002811_220 Hb_000260_590 Hb_000260_590 Hb_000088_150--Hb_000260_590 Hb_001221_200 Hb_001221_200 Hb_000088_150--Hb_001221_200 Hb_000505_050 Hb_000505_050 Hb_000088_150--Hb_000505_050 Hb_000866_340 Hb_000866_340 Hb_000088_150--Hb_000866_340 Hb_007504_030 Hb_007504_030 Hb_000088_150--Hb_007504_030 Hb_000603_270 Hb_000603_270 Hb_000088_150--Hb_000603_270 Hb_003388_070--Hb_005656_130 Hb_000331_530 Hb_000331_530 Hb_003388_070--Hb_000331_530 Hb_000210_200 Hb_000210_200 Hb_003388_070--Hb_000210_200 Hb_006054_040 Hb_006054_040 Hb_003388_070--Hb_006054_040 Hb_004048_030 Hb_004048_030 Hb_003388_070--Hb_004048_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.184296 0 0.7016 0.348233 0 0.875717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.407238

CAGE analysis