Hb_000505_050

Information

Type -
Description -
Location Contig505: 39263-42026
Sequence    

Annotation

kegg
ID zma:100501670
description uncharacterized LOC100501670
nr
ID XP_012449990.1
description PREDICTED: heparanase-like protein 3 isoform X2 [Gossypium raimondii]
swissprot
ID Q90YK5
description Heparanase OS=Gallus gallus GN=HPSE PE=1 SV=1
trembl
ID A0A0D2U9P8
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G059600 PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_050 0.0 - - PREDICTED: heparanase-like protein 3 isoform X2 [Gossypium raimondii]
2 Hb_000088_150 0.1995626397 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
3 Hb_000505_080 0.2067039339 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
4 Hb_001942_020 0.2205538295 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
5 Hb_009838_020 0.2300123643 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
6 Hb_005479_010 0.2306256844 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
7 Hb_000866_340 0.2353803791 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000347_190 0.2384104616 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
9 Hb_001675_050 0.2412333246 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
10 Hb_000608_150 0.2422695347 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
11 Hb_000977_290 0.2454197588 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
12 Hb_000815_230 0.2457138718 - - conserved hypothetical protein [Ricinus communis]
13 Hb_034168_050 0.246121532 - - Photosystem I assembly protein Ycf3 [Medicago truncatula]
14 Hb_006422_020 0.2467067238 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
15 Hb_001221_200 0.2482591254 - - -
16 Hb_022213_030 0.2489707748 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
17 Hb_000261_400 0.2516441361 - - hypothetical protein JCGZ_01125 [Jatropha curcas]
18 Hb_002869_060 0.2524327934 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
19 Hb_000260_590 0.2531082468 - - electron transporter, putative [Ricinus communis]
20 Hb_001421_040 0.2533452937 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000505_050 Hb_000505_050 Hb_000088_150 Hb_000088_150 Hb_000505_050--Hb_000088_150 Hb_000505_080 Hb_000505_080 Hb_000505_050--Hb_000505_080 Hb_001942_020 Hb_001942_020 Hb_000505_050--Hb_001942_020 Hb_009838_020 Hb_009838_020 Hb_000505_050--Hb_009838_020 Hb_005479_010 Hb_005479_010 Hb_000505_050--Hb_005479_010 Hb_000866_340 Hb_000866_340 Hb_000505_050--Hb_000866_340 Hb_000260_590 Hb_000260_590 Hb_000088_150--Hb_000260_590 Hb_001221_200 Hb_001221_200 Hb_000088_150--Hb_001221_200 Hb_000088_150--Hb_000866_340 Hb_007504_030 Hb_007504_030 Hb_000088_150--Hb_007504_030 Hb_000603_270 Hb_000603_270 Hb_000088_150--Hb_000603_270 Hb_000815_230 Hb_000815_230 Hb_000505_080--Hb_000815_230 Hb_002471_110 Hb_002471_110 Hb_000505_080--Hb_002471_110 Hb_001675_050 Hb_001675_050 Hb_000505_080--Hb_001675_050 Hb_010344_030 Hb_010344_030 Hb_000505_080--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_000505_080--Hb_006006_060 Hb_002053_050 Hb_002053_050 Hb_000505_080--Hb_002053_050 Hb_022213_030 Hb_022213_030 Hb_001942_020--Hb_022213_030 Hb_001516_050 Hb_001516_050 Hb_001942_020--Hb_001516_050 Hb_001087_010 Hb_001087_010 Hb_001942_020--Hb_001087_010 Hb_007527_040 Hb_007527_040 Hb_001942_020--Hb_007527_040 Hb_177343_010 Hb_177343_010 Hb_001942_020--Hb_177343_010 Hb_163145_030 Hb_163145_030 Hb_001942_020--Hb_163145_030 Hb_004899_340 Hb_004899_340 Hb_009838_020--Hb_004899_340 Hb_005941_030 Hb_005941_030 Hb_009838_020--Hb_005941_030 Hb_003029_060 Hb_003029_060 Hb_009838_020--Hb_003029_060 Hb_001221_190 Hb_001221_190 Hb_009838_020--Hb_001221_190 Hb_000071_160 Hb_000071_160 Hb_009838_020--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_009838_020--Hb_000977_290 Hb_001793_050 Hb_001793_050 Hb_005479_010--Hb_001793_050 Hb_002097_100 Hb_002097_100 Hb_005479_010--Hb_002097_100 Hb_005479_010--Hb_000260_590 Hb_001976_060 Hb_001976_060 Hb_005479_010--Hb_001976_060 Hb_001623_080 Hb_001623_080 Hb_005479_010--Hb_001623_080 Hb_001195_130 Hb_001195_130 Hb_005479_010--Hb_001195_130 Hb_000866_340--Hb_001221_200 Hb_000866_340--Hb_000977_290 Hb_015531_030 Hb_015531_030 Hb_000866_340--Hb_015531_030 Hb_150651_020 Hb_150651_020 Hb_000866_340--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_000866_340--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_000866_340--Hb_004705_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.611711 0.147024 0.828187 1.49875 0.0342359 0.97222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.077061 0.259941 2.23217

CAGE analysis