Hb_002097_100

Information

Type -
Description -
Location Contig2097: 200596-209327
Sequence    

Annotation

kegg
ID rcu:RCOM_1353380
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002519452.1
description protein with unknown function [Ricinus communis]
swissprot
ID O49841
description Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1
trembl
ID B9S0D3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353380 PE=3 SV=1
Gene Ontology
ID GO:0005777
description ras-related protein rabc2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21685: 200731-204677 , PASA_asmbl_21686: 206445-209043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_100 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_026549_070 0.1154244078 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
3 Hb_004306_110 0.1207966953 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
4 Hb_000815_230 0.1252531647 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001847_050 0.1316832431 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
6 Hb_002053_050 0.1339701732 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_001579_300 0.135001955 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
8 Hb_001049_150 0.1357146497 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
9 Hb_000959_300 0.1367949057 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
10 Hb_000062_400 0.1393285869 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000000_310 0.1405719295 - - metalloendopeptidase, putative [Ricinus communis]
12 Hb_002488_010 0.1434182619 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
13 Hb_000107_250 0.1441440796 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
14 Hb_000390_190 0.1446620244 - - ATP binding protein, putative [Ricinus communis]
15 Hb_003680_030 0.1458671626 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
16 Hb_012807_150 0.1469735923 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
17 Hb_073973_120 0.1469780467 - - zinc finger protein, putative [Ricinus communis]
18 Hb_116702_010 0.1480322982 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
19 Hb_005062_060 0.1480608093 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
20 Hb_002675_080 0.1497615781 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]

Gene co-expression network

sample Hb_002097_100 Hb_002097_100 Hb_026549_070 Hb_026549_070 Hb_002097_100--Hb_026549_070 Hb_004306_110 Hb_004306_110 Hb_002097_100--Hb_004306_110 Hb_000815_230 Hb_000815_230 Hb_002097_100--Hb_000815_230 Hb_001847_050 Hb_001847_050 Hb_002097_100--Hb_001847_050 Hb_002053_050 Hb_002053_050 Hb_002097_100--Hb_002053_050 Hb_001579_300 Hb_001579_300 Hb_002097_100--Hb_001579_300 Hb_000139_300 Hb_000139_300 Hb_026549_070--Hb_000139_300 Hb_026549_070--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_026549_070--Hb_001195_660 Hb_000062_400 Hb_000062_400 Hb_004306_110--Hb_000062_400 Hb_004306_110--Hb_000139_300 Hb_000390_190 Hb_000390_190 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_004306_110--Hb_000920_310 Hb_000505_080 Hb_000505_080 Hb_000815_230--Hb_000505_080 Hb_000815_230--Hb_002053_050 Hb_003682_070 Hb_003682_070 Hb_000815_230--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000815_230--Hb_000000_310 Hb_010344_030 Hb_010344_030 Hb_000815_230--Hb_010344_030 Hb_004735_020 Hb_004735_020 Hb_000815_230--Hb_004735_020 Hb_002217_320 Hb_002217_320 Hb_001847_050--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_001847_050--Hb_012807_150 Hb_001195_130 Hb_001195_130 Hb_001847_050--Hb_001195_130 Hb_006925_050 Hb_006925_050 Hb_001847_050--Hb_006925_050 Hb_004730_020 Hb_004730_020 Hb_001847_050--Hb_004730_020 Hb_000342_170 Hb_000342_170 Hb_001847_050--Hb_000342_170 Hb_005062_060 Hb_005062_060 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_022693_130 Hb_022693_130 Hb_002053_050--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_005511_130 Hb_005511_130 Hb_001579_300--Hb_005511_130 Hb_000388_080 Hb_000388_080 Hb_001579_300--Hb_000388_080 Hb_001579_300--Hb_006925_050 Hb_000527_080 Hb_000527_080 Hb_001579_300--Hb_000527_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.844 8.42851 20.9031 33.0725 4.0668 7.52541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65742 2.57036 5.43914 2.55792 27.792

CAGE analysis