Hb_000088_150

Information

Type -
Description -
Location Contig88: 204010-205300
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11250g
description hypothetical protein
nr
ID XP_006376238.1
description hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
swissprot
ID Q9W4S1
description Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2
trembl
ID U5FSP6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11250g PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein ssuh2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_150 0.0 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
2 Hb_000260_590 0.1658588892 - - electron transporter, putative [Ricinus communis]
3 Hb_001221_200 0.1995089879 - - -
4 Hb_000505_050 0.1995626397 - - PREDICTED: heparanase-like protein 3 isoform X2 [Gossypium raimondii]
5 Hb_000866_340 0.2020411194 - - DNA binding protein, putative [Ricinus communis]
6 Hb_007504_030 0.223472151 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
7 Hb_000603_270 0.2310855816 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
8 Hb_005479_010 0.2327071657 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
9 Hb_015531_030 0.2356018727 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004542_020 0.2477216752 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
11 Hb_000505_080 0.2485473901 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
12 Hb_000261_400 0.2531004461 - - hypothetical protein JCGZ_01125 [Jatropha curcas]
13 Hb_000608_150 0.2535560995 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
14 Hb_001421_040 0.2551920322 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 2 [Jatropha curcas]
15 Hb_188063_030 0.2573030057 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
16 Hb_181838_010 0.2624924141 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
17 Hb_007317_170 0.2628724755 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
18 Hb_001728_110 0.2640155684 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
19 Hb_001231_010 0.2661107623 - - calcium-binding family protein [Populus trichocarpa]
20 Hb_069512_010 0.2672515035 - - -

Gene co-expression network

sample Hb_000088_150 Hb_000088_150 Hb_000260_590 Hb_000260_590 Hb_000088_150--Hb_000260_590 Hb_001221_200 Hb_001221_200 Hb_000088_150--Hb_001221_200 Hb_000505_050 Hb_000505_050 Hb_000088_150--Hb_000505_050 Hb_000866_340 Hb_000866_340 Hb_000088_150--Hb_000866_340 Hb_007504_030 Hb_007504_030 Hb_000088_150--Hb_007504_030 Hb_000603_270 Hb_000603_270 Hb_000088_150--Hb_000603_270 Hb_005479_010 Hb_005479_010 Hb_000260_590--Hb_005479_010 Hb_000505_080 Hb_000505_080 Hb_000260_590--Hb_000505_080 Hb_000260_590--Hb_000866_340 Hb_005063_080 Hb_005063_080 Hb_000260_590--Hb_005063_080 Hb_004542_020 Hb_004542_020 Hb_000260_590--Hb_004542_020 Hb_001221_200--Hb_000866_340 Hb_181838_010 Hb_181838_010 Hb_001221_200--Hb_181838_010 Hb_001221_190 Hb_001221_190 Hb_001221_200--Hb_001221_190 Hb_000977_290 Hb_000977_290 Hb_001221_200--Hb_000977_290 Hb_000261_400 Hb_000261_400 Hb_001221_200--Hb_000261_400 Hb_001221_200--Hb_005063_080 Hb_000505_050--Hb_000505_080 Hb_001942_020 Hb_001942_020 Hb_000505_050--Hb_001942_020 Hb_009838_020 Hb_009838_020 Hb_000505_050--Hb_009838_020 Hb_000505_050--Hb_005479_010 Hb_000505_050--Hb_000866_340 Hb_000866_340--Hb_000977_290 Hb_015531_030 Hb_015531_030 Hb_000866_340--Hb_015531_030 Hb_150651_020 Hb_150651_020 Hb_000866_340--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_000866_340--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_000866_340--Hb_004705_070 Hb_007317_170 Hb_007317_170 Hb_007504_030--Hb_007317_170 Hb_007504_030--Hb_000603_270 Hb_003055_030 Hb_003055_030 Hb_007504_030--Hb_003055_030 Hb_004143_030 Hb_004143_030 Hb_007504_030--Hb_004143_030 Hb_071126_010 Hb_071126_010 Hb_007504_030--Hb_071126_010 Hb_004208_090 Hb_004208_090 Hb_007504_030--Hb_004208_090 Hb_002400_010 Hb_002400_010 Hb_000603_270--Hb_002400_010 Hb_002498_170 Hb_002498_170 Hb_000603_270--Hb_002498_170 Hb_000340_410 Hb_000340_410 Hb_000603_270--Hb_000340_410 Hb_001352_080 Hb_001352_080 Hb_000603_270--Hb_001352_080 Hb_000322_040 Hb_000322_040 Hb_000603_270--Hb_000322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89889 0.222684 4.62912 3.14742 0.820237 3.66023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.199545 7.44018

CAGE analysis