Hb_002248_040

Information

Type -
Description -
Location Contig2248: 40831-41178
Sequence    

Annotation

kegg
ID rcu:RCOM_1170240
description hypothetical protein
nr
ID XP_002533012.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B1NWJ3
description Protein Ycf2 OS=Manihot esculenta GN=ycf2 PE=3 SV=1
trembl
ID B9T443
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1170240 PE=4 SV=1
Gene Ontology
ID GO:0009570
description ycf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007595_060 0.1936395543 - - conserved hypothetical protein [Ricinus communis]
3 Hb_126395_010 0.1980300587 - - hypothetical protein VITISV_043980 [Vitis vinifera]
4 Hb_011649_020 0.2569787416 - - PREDICTED: uncharacterized protein LOC104212904 isoform X1 [Nicotiana sylvestris]
5 Hb_000457_190 0.2654262877 - - -
6 Hb_115031_030 0.2748637251 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
7 Hb_000331_050 0.2774698964 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
8 Hb_003371_050 0.2869608821 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001814_060 0.2918296672 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
10 Hb_010171_010 0.2972135955 - - hypothetical protein VITISV_033646 [Vitis vinifera]
11 Hb_000049_130 0.2996369416 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
12 Hb_005656_130 0.3034558213 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
13 Hb_145745_040 0.3198561131 - - Cell wall-associated hydrolase [Medicago truncatula]
14 Hb_000483_320 0.3207840659 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
15 Hb_003388_070 0.3418130312 - - 60S ribosomal protein L32A [Hevea brasiliensis]
16 Hb_000915_190 0.3422129838 - - -
17 Hb_000053_050 0.342615159 - - hypothetical protein F775_01878 [Aegilops tauschii]
18 Hb_000088_150 0.3441306453 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
19 Hb_095399_010 0.3443557187 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
20 Hb_001221_200 0.3478612081 - - -

Gene co-expression network

sample Hb_002248_040 Hb_002248_040 Hb_007595_060 Hb_007595_060 Hb_002248_040--Hb_007595_060 Hb_126395_010 Hb_126395_010 Hb_002248_040--Hb_126395_010 Hb_011649_020 Hb_011649_020 Hb_002248_040--Hb_011649_020 Hb_000457_190 Hb_000457_190 Hb_002248_040--Hb_000457_190 Hb_115031_030 Hb_115031_030 Hb_002248_040--Hb_115031_030 Hb_000331_050 Hb_000331_050 Hb_002248_040--Hb_000331_050 Hb_105123_020 Hb_105123_020 Hb_007595_060--Hb_105123_020 Hb_001519_230 Hb_001519_230 Hb_007595_060--Hb_001519_230 Hb_007595_060--Hb_126395_010 Hb_095399_010 Hb_095399_010 Hb_007595_060--Hb_095399_010 Hb_007595_060--Hb_000457_190 Hb_126395_010--Hb_115031_030 Hb_003388_070 Hb_003388_070 Hb_126395_010--Hb_003388_070 Hb_005656_130 Hb_005656_130 Hb_126395_010--Hb_005656_130 Hb_001706_030 Hb_001706_030 Hb_126395_010--Hb_001706_030 Hb_000483_320 Hb_000483_320 Hb_011649_020--Hb_000483_320 Hb_001221_190 Hb_001221_190 Hb_011649_020--Hb_001221_190 Hb_000690_170 Hb_000690_170 Hb_011649_020--Hb_000690_170 Hb_000023_270 Hb_000023_270 Hb_011649_020--Hb_000023_270 Hb_003371_050 Hb_003371_050 Hb_011649_020--Hb_003371_050 Hb_001141_300 Hb_001141_300 Hb_000457_190--Hb_001141_300 Hb_000049_130 Hb_000049_130 Hb_000457_190--Hb_000049_130 Hb_001814_060 Hb_001814_060 Hb_000457_190--Hb_001814_060 Hb_000094_030 Hb_000094_030 Hb_000457_190--Hb_000094_030 Hb_011310_090 Hb_011310_090 Hb_000457_190--Hb_011310_090 Hb_145745_040 Hb_145745_040 Hb_115031_030--Hb_145745_040 Hb_115031_030--Hb_000331_050 Hb_000088_150 Hb_000088_150 Hb_115031_030--Hb_000088_150 Hb_115031_030--Hb_003388_070 Hb_000331_050--Hb_003371_050 Hb_000331_050--Hb_145745_040 Hb_000120_630 Hb_000120_630 Hb_000331_050--Hb_000120_630 Hb_002811_220 Hb_002811_220 Hb_000331_050--Hb_002811_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.910189 1.49091 0 2.8417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.05023

CAGE analysis