Hb_000331_050

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig331: 62434-64826
Sequence    

Annotation

kegg
ID rcu:RCOM_1506520
description brg-1 associated factor, putative
nr
ID KDP30927.1
description hypothetical protein JCGZ_11303 [Jatropha curcas]
swissprot
ID Q9FMT4
description SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1
trembl
ID A0A067K474
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11303 PE=4 SV=1
Gene Ontology
ID GO:0005515
description swi snf complex component snf12 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34753: 64160-64359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_050 0.0 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
2 Hb_003371_050 0.1559563845 - - conserved hypothetical protein [Ricinus communis]
3 Hb_145745_040 0.1818045662 - - Cell wall-associated hydrolase [Medicago truncatula]
4 Hb_000120_630 0.2324370283 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
5 Hb_002811_220 0.2737921373 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
6 Hb_115031_030 0.2754896387 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
7 Hb_002248_040 0.2774698964 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003388_070 0.2781459671 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_004907_040 0.2824420016 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
10 Hb_007904_050 0.2830489596 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
11 Hb_006054_040 0.290152581 - - -
12 Hb_000608_150 0.2920314831 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
13 Hb_004254_060 0.2922306946 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
14 Hb_000049_130 0.2951536858 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
15 Hb_115823_010 0.2992996505 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006693_040 0.3002137354 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
17 Hb_018133_080 0.3104984032 - - -
18 Hb_003680_040 0.3129350661 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
19 Hb_001916_010 0.3134733753 - - hypothetical protein VITISV_021527 [Vitis vinifera]
20 Hb_005656_130 0.3156495746 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_050 Hb_000331_050 Hb_003371_050 Hb_003371_050 Hb_000331_050--Hb_003371_050 Hb_145745_040 Hb_145745_040 Hb_000331_050--Hb_145745_040 Hb_000120_630 Hb_000120_630 Hb_000331_050--Hb_000120_630 Hb_002811_220 Hb_002811_220 Hb_000331_050--Hb_002811_220 Hb_115031_030 Hb_115031_030 Hb_000331_050--Hb_115031_030 Hb_002248_040 Hb_002248_040 Hb_000331_050--Hb_002248_040 Hb_003371_050--Hb_145745_040 Hb_003371_050--Hb_000120_630 Hb_000608_150 Hb_000608_150 Hb_003371_050--Hb_000608_150 Hb_000483_320 Hb_000483_320 Hb_003371_050--Hb_000483_320 Hb_001545_010 Hb_001545_010 Hb_003371_050--Hb_001545_010 Hb_145745_040--Hb_000608_150 Hb_145745_040--Hb_000120_630 Hb_003388_070 Hb_003388_070 Hb_145745_040--Hb_003388_070 Hb_000085_010 Hb_000085_010 Hb_145745_040--Hb_000085_010 Hb_004254_060 Hb_004254_060 Hb_000120_630--Hb_004254_060 Hb_001140_190 Hb_001140_190 Hb_000120_630--Hb_001140_190 Hb_000958_160 Hb_000958_160 Hb_000120_630--Hb_000958_160 Hb_000120_630--Hb_002811_220 Hb_000352_010 Hb_000352_010 Hb_000120_630--Hb_000352_010 Hb_002942_170 Hb_002942_170 Hb_002811_220--Hb_002942_170 Hb_000002_430 Hb_000002_430 Hb_002811_220--Hb_000002_430 Hb_000416_080 Hb_000416_080 Hb_002811_220--Hb_000416_080 Hb_003750_090 Hb_003750_090 Hb_002811_220--Hb_003750_090 Hb_059567_010 Hb_059567_010 Hb_002811_220--Hb_059567_010 Hb_115031_030--Hb_145745_040 Hb_126395_010 Hb_126395_010 Hb_115031_030--Hb_126395_010 Hb_115031_030--Hb_002248_040 Hb_000088_150 Hb_000088_150 Hb_115031_030--Hb_000088_150 Hb_115031_030--Hb_003388_070 Hb_007595_060 Hb_007595_060 Hb_002248_040--Hb_007595_060 Hb_002248_040--Hb_126395_010 Hb_011649_020 Hb_011649_020 Hb_002248_040--Hb_011649_020 Hb_000457_190 Hb_000457_190 Hb_002248_040--Hb_000457_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.128588 0.135077 0 0.0961663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0513991

CAGE analysis