Hb_000085_010

Information

Type -
Description -
Location Contig85: 13304-14728
Sequence    

Annotation

kegg
ID rcu:RCOM_0546610
description zinc finger protein, putative
nr
ID XP_002531196.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8VY93
description GDSL esterase/lipase At4g26790 OS=Arabidopsis thaliana GN=At4g26790 PE=2 SV=1
trembl
ID B9SYX7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0546610 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at4g26790

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60320: 13373-14555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_010 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_145745_040 0.2181378583 - - Cell wall-associated hydrolase [Medicago truncatula]
3 Hb_006054_040 0.2405673144 - - -
4 Hb_003680_040 0.2412558036 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
5 Hb_000352_010 0.2483161088 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
6 Hb_081529_010 0.2488941345 - - unnamed protein product [Vitis vinifera]
7 Hb_012653_010 0.2494694213 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
8 Hb_000042_390 0.2498331782 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
9 Hb_004447_050 0.252827584 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
10 Hb_002046_130 0.2557691383 - - PREDICTED: UDP-sugar transporter sqv-7-like [Jatropha curcas]
11 Hb_010863_030 0.2591575923 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
12 Hb_001510_040 0.2619895111 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
13 Hb_000020_080 0.2632452506 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
14 Hb_001347_030 0.2642864731 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_001266_150 0.2691875017 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
16 Hb_010683_030 0.2710568765 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000120_630 0.2721400275 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
18 Hb_001638_120 0.2723147127 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
19 Hb_010288_030 0.2726154824 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
20 Hb_002400_050 0.2765954616 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_010 Hb_000085_010 Hb_145745_040 Hb_145745_040 Hb_000085_010--Hb_145745_040 Hb_006054_040 Hb_006054_040 Hb_000085_010--Hb_006054_040 Hb_003680_040 Hb_003680_040 Hb_000085_010--Hb_003680_040 Hb_000352_010 Hb_000352_010 Hb_000085_010--Hb_000352_010 Hb_081529_010 Hb_081529_010 Hb_000085_010--Hb_081529_010 Hb_012653_010 Hb_012653_010 Hb_000085_010--Hb_012653_010 Hb_000608_150 Hb_000608_150 Hb_145745_040--Hb_000608_150 Hb_003371_050 Hb_003371_050 Hb_145745_040--Hb_003371_050 Hb_000331_050 Hb_000331_050 Hb_145745_040--Hb_000331_050 Hb_000120_630 Hb_000120_630 Hb_145745_040--Hb_000120_630 Hb_003388_070 Hb_003388_070 Hb_145745_040--Hb_003388_070 Hb_000186_310 Hb_000186_310 Hb_006054_040--Hb_000186_310 Hb_006054_040--Hb_145745_040 Hb_006054_040--Hb_003388_070 Hb_088080_020 Hb_088080_020 Hb_006054_040--Hb_088080_020 Hb_115823_010 Hb_115823_010 Hb_006054_040--Hb_115823_010 Hb_001579_300 Hb_001579_300 Hb_003680_040--Hb_001579_300 Hb_004730_020 Hb_004730_020 Hb_003680_040--Hb_004730_020 Hb_005496_020 Hb_005496_020 Hb_003680_040--Hb_005496_020 Hb_000388_080 Hb_000388_080 Hb_003680_040--Hb_000388_080 Hb_000856_400 Hb_000856_400 Hb_003680_040--Hb_000856_400 Hb_000984_220 Hb_000984_220 Hb_003680_040--Hb_000984_220 Hb_010288_030 Hb_010288_030 Hb_000352_010--Hb_010288_030 Hb_001680_020 Hb_001680_020 Hb_000352_010--Hb_001680_020 Hb_001140_190 Hb_001140_190 Hb_000352_010--Hb_001140_190 Hb_071674_010 Hb_071674_010 Hb_000352_010--Hb_071674_010 Hb_004115_010 Hb_004115_010 Hb_000352_010--Hb_004115_010 Hb_000139_040 Hb_000139_040 Hb_000352_010--Hb_000139_040 Hb_018133_070 Hb_018133_070 Hb_081529_010--Hb_018133_070 Hb_081529_010--Hb_010288_030 Hb_006133_020 Hb_006133_020 Hb_081529_010--Hb_006133_020 Hb_081529_010--Hb_012653_010 Hb_000020_040 Hb_000020_040 Hb_081529_010--Hb_000020_040 Hb_003020_190 Hb_003020_190 Hb_081529_010--Hb_003020_190 Hb_024973_020 Hb_024973_020 Hb_012653_010--Hb_024973_020 Hb_004218_050 Hb_004218_050 Hb_012653_010--Hb_004218_050 Hb_001343_120 Hb_001343_120 Hb_012653_010--Hb_001343_120 Hb_003935_090 Hb_003935_090 Hb_012653_010--Hb_003935_090 Hb_000042_390 Hb_000042_390 Hb_012653_010--Hb_000042_390 Hb_001536_020 Hb_001536_020 Hb_012653_010--Hb_001536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104172 0.177099 1.17151 0.468809 0 0.32493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0477054 0 0 0 0.231062

CAGE analysis