Hb_003680_040

Information

Type -
Description -
Location Contig3680: 41388-47753
Sequence    

Annotation

kegg
ID rcu:RCOM_1351720
description polyadenylate-binding protein, putative
nr
ID XP_012082518.1
description PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQA8
description Polyadenylate-binding protein 7 OS=Arabidopsis thaliana GN=PAB7 PE=2 SV=1
trembl
ID A0A067K2I6
description Polyadenylate-binding protein OS=Jatropha curcas GN=JCGZ_16607 PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37822: 35945-40414 , PASA_asmbl_37824: 38739-40567 , PASA_asmbl_37825: 43358-43468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_040 0.0 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
2 Hb_001579_300 0.1829203 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
3 Hb_004730_020 0.1959324111 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
4 Hb_005496_020 0.1994811503 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
5 Hb_000388_080 0.2044283765 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
6 Hb_000856_400 0.2140890748 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
7 Hb_000984_220 0.2148764259 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
8 Hb_002026_020 0.2150919282 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
9 Hb_012286_060 0.2191010162 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
10 Hb_018133_100 0.2197564424 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002488_010 0.2202076382 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_006133_020 0.2203356581 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
13 Hb_118283_010 0.220555675 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006693_040 0.2218016644 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
15 Hb_003688_010 0.2232903384 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
16 Hb_018133_070 0.2248543477 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
17 Hb_000599_330 0.2270601203 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
18 Hb_005348_150 0.2290577806 - - PREDICTED: actin-100-like [Jatropha curcas]
19 Hb_002097_100 0.2290737239 - - protein with unknown function [Ricinus communis]
20 Hb_000963_050 0.2292069848 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003680_040 Hb_003680_040 Hb_001579_300 Hb_001579_300 Hb_003680_040--Hb_001579_300 Hb_004730_020 Hb_004730_020 Hb_003680_040--Hb_004730_020 Hb_005496_020 Hb_005496_020 Hb_003680_040--Hb_005496_020 Hb_000388_080 Hb_000388_080 Hb_003680_040--Hb_000388_080 Hb_000856_400 Hb_000856_400 Hb_003680_040--Hb_000856_400 Hb_000984_220 Hb_000984_220 Hb_003680_040--Hb_000984_220 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_005511_130 Hb_005511_130 Hb_001579_300--Hb_005511_130 Hb_001579_300--Hb_000388_080 Hb_006925_050 Hb_006925_050 Hb_001579_300--Hb_006925_050 Hb_000527_080 Hb_000527_080 Hb_001579_300--Hb_000527_080 Hb_004730_020--Hb_005511_130 Hb_000032_410 Hb_000032_410 Hb_004730_020--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_004730_020--Hb_005357_110 Hb_004730_020--Hb_000527_080 Hb_003740_020 Hb_003740_020 Hb_004730_020--Hb_003740_020 Hb_005496_020--Hb_004730_020 Hb_000689_050 Hb_000689_050 Hb_005496_020--Hb_000689_050 Hb_005496_020--Hb_001579_300 Hb_005496_020--Hb_000984_220 Hb_005496_020--Hb_006925_050 Hb_005074_040 Hb_005074_040 Hb_005496_020--Hb_005074_040 Hb_000076_250 Hb_000076_250 Hb_000388_080--Hb_000076_250 Hb_000357_070 Hb_000357_070 Hb_000388_080--Hb_000357_070 Hb_002028_110 Hb_002028_110 Hb_000388_080--Hb_002028_110 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_004994_330 Hb_004994_330 Hb_000388_080--Hb_004994_330 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_001195_130 Hb_001195_130 Hb_000856_400--Hb_001195_130 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000193_210 Hb_000193_210 Hb_000856_400--Hb_000193_210 Hb_000856_400--Hb_001579_300 Hb_000984_220--Hb_005511_130 Hb_000984_220--Hb_004730_020 Hb_000800_020 Hb_000800_020 Hb_000984_220--Hb_000800_020 Hb_001160_110 Hb_001160_110 Hb_000984_220--Hb_001160_110 Hb_003687_080 Hb_003687_080 Hb_000984_220--Hb_003687_080 Hb_004158_050 Hb_004158_050 Hb_000984_220--Hb_004158_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0363514 0.0448535 0.284104 0.308315 0.010458 0.107253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0237403 0 0.035377 0.00743473 0.118265

CAGE analysis