Hb_081529_010

Information

Type -
Description -
Location Contig81529: 318-777
Sequence    

Annotation

kegg
ID cit:102626717
description F-box/kelch-repeat protein At1g67480-like
nr
ID CBI27626.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID K7LS04
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59381: 1-2124 , PASA_asmbl_59382: 980-1253
cDNA
(Sanger)
(ID:Location)		 009_C09.ab1: 22-2124 , 038_L18.ab1: 1-2121

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081529_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_018133_070 0.1506191442 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
3 Hb_010288_030 0.1527243145 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
4 Hb_006133_020 0.1543563807 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
5 Hb_012653_010 0.1545610631 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
6 Hb_000020_040 0.1552899652 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
7 Hb_003020_190 0.1585826797 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
8 Hb_001755_040 0.1593998348 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
9 Hb_000352_010 0.1596253002 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
10 Hb_001862_050 0.1661380086 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
11 Hb_024973_020 0.1725405182 - - Protein regulator of cytokinesis, putative [Ricinus communis]
12 Hb_047659_010 0.1735594657 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001141_050 0.1762687367 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
14 Hb_002232_310 0.1767919275 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
15 Hb_000964_050 0.1792125253 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
16 Hb_011033_010 0.1794209945 - - ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_002078_120 0.1794447039 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
18 Hb_000932_110 0.1799030494 - - Root phototropism protein, putative [Ricinus communis]
19 Hb_071674_010 0.1812952895 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
20 Hb_003109_010 0.1851629665 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]

Gene co-expression network

sample Hb_081529_010 Hb_081529_010 Hb_018133_070 Hb_018133_070 Hb_081529_010--Hb_018133_070 Hb_010288_030 Hb_010288_030 Hb_081529_010--Hb_010288_030 Hb_006133_020 Hb_006133_020 Hb_081529_010--Hb_006133_020 Hb_012653_010 Hb_012653_010 Hb_081529_010--Hb_012653_010 Hb_000020_040 Hb_000020_040 Hb_081529_010--Hb_000020_040 Hb_003020_190 Hb_003020_190 Hb_081529_010--Hb_003020_190 Hb_018133_070--Hb_006133_020 Hb_010683_030 Hb_010683_030 Hb_018133_070--Hb_010683_030 Hb_000032_360 Hb_000032_360 Hb_018133_070--Hb_000032_360 Hb_000925_150 Hb_000925_150 Hb_018133_070--Hb_000925_150 Hb_018133_070--Hb_003020_190 Hb_047659_010 Hb_047659_010 Hb_018133_070--Hb_047659_010 Hb_071674_010 Hb_071674_010 Hb_010288_030--Hb_071674_010 Hb_010288_030--Hb_003020_190 Hb_000352_010 Hb_000352_010 Hb_010288_030--Hb_000352_010 Hb_011033_010 Hb_011033_010 Hb_010288_030--Hb_011033_010 Hb_001755_040 Hb_001755_040 Hb_010288_030--Hb_001755_040 Hb_007574_020 Hb_007574_020 Hb_010288_030--Hb_007574_020 Hb_008511_040 Hb_008511_040 Hb_006133_020--Hb_008511_040 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_024973_020 Hb_024973_020 Hb_012653_010--Hb_024973_020 Hb_004218_050 Hb_004218_050 Hb_012653_010--Hb_004218_050 Hb_001343_120 Hb_001343_120 Hb_012653_010--Hb_001343_120 Hb_003935_090 Hb_003935_090 Hb_012653_010--Hb_003935_090 Hb_000042_390 Hb_000042_390 Hb_012653_010--Hb_000042_390 Hb_001536_020 Hb_001536_020 Hb_012653_010--Hb_001536_020 Hb_004079_090 Hb_004079_090 Hb_000020_040--Hb_004079_090 Hb_011457_120 Hb_011457_120 Hb_000020_040--Hb_011457_120 Hb_000020_040--Hb_001755_040 Hb_002232_310 Hb_002232_310 Hb_000020_040--Hb_002232_310 Hb_011360_130 Hb_011360_130 Hb_000020_040--Hb_011360_130 Hb_014497_070 Hb_014497_070 Hb_000020_040--Hb_014497_070 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_001862_050 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52828 5.05902 74.5369 32.0839 3.20422 6.4797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6282 2.74111 2.27936 1.11583 15.9203

CAGE analysis