Hb_000230_190

Information

Type -
Description -
Location Contig230: 223355-225542
Sequence    

Annotation

kegg
ID pmum:103322896
description receptor-like cytosolic serine/threonine-protein kinase RBK2
nr
ID XP_012069452.1
description PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
swissprot
ID Q8RXC8
description Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1
trembl
ID A0A067L6C5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02053 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like cytosolic serine threonine-protein kinase rbk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24010: 224328-224621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_190 0.0 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
2 Hb_006133_020 0.1114773815 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
3 Hb_001141_050 0.1172135184 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
4 Hb_003020_190 0.1216416448 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
5 Hb_001377_530 0.1249214687 - - NC domain-containing family protein [Populus trichocarpa]
6 Hb_000958_120 0.1268885714 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
7 Hb_000069_300 0.1273952113 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_004195_140 0.1304018858 - - Sec14 cytosolic factor, putative [Ricinus communis]
9 Hb_004163_030 0.1324585603 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
10 Hb_001922_110 0.132728966 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008511_040 0.1352369631 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_071674_010 0.1357724556 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
13 Hb_001123_310 0.136773437 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_002701_070 0.1371429857 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
15 Hb_008053_030 0.1383392996 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
16 Hb_002965_160 0.1458393196 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
17 Hb_007943_180 0.1488370364 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
18 Hb_010288_030 0.1491766104 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
19 Hb_002045_090 0.1501006173 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
20 Hb_001862_050 0.1527292792 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]

Gene co-expression network

sample Hb_000230_190 Hb_000230_190 Hb_006133_020 Hb_006133_020 Hb_000230_190--Hb_006133_020 Hb_001141_050 Hb_001141_050 Hb_000230_190--Hb_001141_050 Hb_003020_190 Hb_003020_190 Hb_000230_190--Hb_003020_190 Hb_001377_530 Hb_001377_530 Hb_000230_190--Hb_001377_530 Hb_000958_120 Hb_000958_120 Hb_000230_190--Hb_000958_120 Hb_000069_300 Hb_000069_300 Hb_000230_190--Hb_000069_300 Hb_008511_040 Hb_008511_040 Hb_006133_020--Hb_008511_040 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_006133_020--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_001862_050 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_003398_040 Hb_003398_040 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_003299_020 Hb_003299_020 Hb_001377_530--Hb_003299_020 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170 Hb_000958_120--Hb_001922_110 Hb_002701_070 Hb_002701_070 Hb_000958_120--Hb_002701_070 Hb_000958_120--Hb_000227_400 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000390_210 Hb_000390_210 Hb_000958_120--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000958_120--Hb_001544_050 Hb_001541_190 Hb_001541_190 Hb_000069_300--Hb_001541_190 Hb_000069_300--Hb_008511_040 Hb_000069_300--Hb_001862_050 Hb_000069_300--Hb_006133_020 Hb_000069_300--Hb_001141_050 Hb_000069_300--Hb_001922_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218398 0.464899 3.7435 1.90327 0.0477713 0.0673246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.256817 0.112252 0.338409 0.30437 1.08365

CAGE analysis