Hb_088080_020

Information

Type -
Description -
Location Contig88080: 3442-3621
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61431: 4246-5776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088080_020 0.0 - - -
2 Hb_004881_010 0.1612830946 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
3 Hb_006816_490 0.1635729037 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 21 [Jatropha curcas]
4 Hb_001862_030 0.1845778944 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
5 Hb_002046_130 0.1850048333 - - PREDICTED: UDP-sugar transporter sqv-7-like [Jatropha curcas]
6 Hb_169893_010 0.186543638 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
7 Hb_001195_550 0.1879717116 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
8 Hb_000809_130 0.1927403324 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
9 Hb_002184_080 0.1931518408 - - triacylglycerol lipase, putative [Ricinus communis]
10 Hb_006196_030 0.1987531477 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
11 Hb_008686_010 0.199306756 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003029_120 0.2008291695 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
13 Hb_000996_040 0.202482811 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
14 Hb_000599_330 0.2029063633 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
15 Hb_000395_120 0.2030794481 - - Stellacyanin, putative [Ricinus communis]
16 Hb_000453_020 0.2031250823 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000165_090 0.2041671566 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
18 Hb_077694_020 0.2056831835 - - SAUR family protein [Theobroma cacao]
19 Hb_143629_120 0.207136563 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_000905_100 0.2094315843 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_088080_020 Hb_088080_020 Hb_004881_010 Hb_004881_010 Hb_088080_020--Hb_004881_010 Hb_006816_490 Hb_006816_490 Hb_088080_020--Hb_006816_490 Hb_001862_030 Hb_001862_030 Hb_088080_020--Hb_001862_030 Hb_002046_130 Hb_002046_130 Hb_088080_020--Hb_002046_130 Hb_169893_010 Hb_169893_010 Hb_088080_020--Hb_169893_010 Hb_001195_550 Hb_001195_550 Hb_088080_020--Hb_001195_550 Hb_077694_020 Hb_077694_020 Hb_004881_010--Hb_077694_020 Hb_000679_250 Hb_000679_250 Hb_004881_010--Hb_000679_250 Hb_000742_130 Hb_000742_130 Hb_004881_010--Hb_000742_130 Hb_092975_010 Hb_092975_010 Hb_004881_010--Hb_092975_010 Hb_002184_080 Hb_002184_080 Hb_004881_010--Hb_002184_080 Hb_001675_290 Hb_001675_290 Hb_004881_010--Hb_001675_290 Hb_006816_490--Hb_169893_010 Hb_070498_010 Hb_070498_010 Hb_006816_490--Hb_070498_010 Hb_008686_010 Hb_008686_010 Hb_006816_490--Hb_008686_010 Hb_015048_020 Hb_015048_020 Hb_006816_490--Hb_015048_020 Hb_006196_030 Hb_006196_030 Hb_006816_490--Hb_006196_030 Hb_006816_490--Hb_002184_080 Hb_003667_020 Hb_003667_020 Hb_001862_030--Hb_003667_020 Hb_002463_050 Hb_002463_050 Hb_001862_030--Hb_002463_050 Hb_000165_090 Hb_000165_090 Hb_001862_030--Hb_000165_090 Hb_000809_130 Hb_000809_130 Hb_001862_030--Hb_000809_130 Hb_001541_190 Hb_001541_190 Hb_001862_030--Hb_001541_190 Hb_001307_020 Hb_001307_020 Hb_001862_030--Hb_001307_020 Hb_000905_100 Hb_000905_100 Hb_002046_130--Hb_000905_100 Hb_001680_020 Hb_001680_020 Hb_002046_130--Hb_001680_020 Hb_002046_130--Hb_000809_130 Hb_004115_010 Hb_004115_010 Hb_002046_130--Hb_004115_010 Hb_004202_030 Hb_004202_030 Hb_002046_130--Hb_004202_030 Hb_029262_010 Hb_029262_010 Hb_002046_130--Hb_029262_010 Hb_169893_010--Hb_008686_010 Hb_169893_010--Hb_001195_550 Hb_169893_010--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_169893_010--Hb_002301_400 Hb_003750_120 Hb_003750_120 Hb_169893_010--Hb_003750_120 Hb_128196_010 Hb_128196_010 Hb_169893_010--Hb_128196_010 Hb_001195_550--Hb_008686_010 Hb_001195_550--Hb_070498_010 Hb_001195_550--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_001195_550--Hb_001159_090 Hb_002639_050 Hb_002639_050 Hb_001195_550--Hb_002639_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 41.6983 102.155 103.567 0 23.8749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 2.06801 0 9.10734 25.1478

CAGE analysis