Hb_004881_010

Information

Type transcription factor
Description TF Family: MIKC
Location Contig4881: 7153-12265
Sequence    

Annotation

kegg
ID cam:101493068
description agamous-like MADS-box protein AGL1-like
nr
ID XP_012066543.1
description PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
swissprot
ID P29385
description Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1
trembl
ID G8FUQ3
description AGAMOUS-like protein OS=Mangifera indica GN=AG2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45104: 7213-12206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_010 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
2 Hb_077694_020 0.0843292211 - - SAUR family protein [Theobroma cacao]
3 Hb_000679_250 0.1394462981 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
4 Hb_000742_130 0.1406120901 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
5 Hb_092975_010 0.1505905997 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
6 Hb_002184_080 0.1519071176 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_001675_290 0.1526004686 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
8 Hb_003992_020 0.1534938646 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
9 Hb_000563_630 0.1551009673 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
10 Hb_001562_030 0.1551235561 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
11 Hb_034507_090 0.1595894306 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
12 Hb_002518_220 0.1605585028 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
13 Hb_088080_020 0.1612830946 - - -
14 Hb_000098_260 0.1618895725 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_032920_030 0.1624318273 - - signal transducer, putative [Ricinus communis]
16 Hb_006120_210 0.162839966 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_003747_250 0.1628800292 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
18 Hb_002522_040 0.1642189848 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
19 Hb_003055_080 0.1644928127 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
20 Hb_000645_160 0.1653048626 - - protein translocase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004881_010 Hb_004881_010 Hb_077694_020 Hb_077694_020 Hb_004881_010--Hb_077694_020 Hb_000679_250 Hb_000679_250 Hb_004881_010--Hb_000679_250 Hb_000742_130 Hb_000742_130 Hb_004881_010--Hb_000742_130 Hb_092975_010 Hb_092975_010 Hb_004881_010--Hb_092975_010 Hb_002184_080 Hb_002184_080 Hb_004881_010--Hb_002184_080 Hb_001675_290 Hb_001675_290 Hb_004881_010--Hb_001675_290 Hb_153180_010 Hb_153180_010 Hb_077694_020--Hb_153180_010 Hb_077694_020--Hb_001675_290 Hb_003427_020 Hb_003427_020 Hb_077694_020--Hb_003427_020 Hb_001417_090 Hb_001417_090 Hb_077694_020--Hb_001417_090 Hb_001856_130 Hb_001856_130 Hb_077694_020--Hb_001856_130 Hb_015934_080 Hb_015934_080 Hb_000679_250--Hb_015934_080 Hb_002171_020 Hb_002171_020 Hb_000679_250--Hb_002171_020 Hb_033312_070 Hb_033312_070 Hb_000679_250--Hb_033312_070 Hb_000679_250--Hb_002184_080 Hb_000645_160 Hb_000645_160 Hb_000679_250--Hb_000645_160 Hb_004558_060 Hb_004558_060 Hb_000679_250--Hb_004558_060 Hb_000742_130--Hb_000645_160 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_006120_210 Hb_006120_210 Hb_000742_130--Hb_006120_210 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_092975_010--Hb_000098_260 Hb_002522_040 Hb_002522_040 Hb_092975_010--Hb_002522_040 Hb_092975_010--Hb_000329_720 Hb_092975_010--Hb_002171_020 Hb_004634_030 Hb_004634_030 Hb_092975_010--Hb_004634_030 Hb_002184_080--Hb_002518_220 Hb_169893_010 Hb_169893_010 Hb_002184_080--Hb_169893_010 Hb_006816_490 Hb_006816_490 Hb_002184_080--Hb_006816_490 Hb_000453_020 Hb_000453_020 Hb_002184_080--Hb_000453_020 Hb_035995_010 Hb_035995_010 Hb_002184_080--Hb_035995_010 Hb_007749_020 Hb_007749_020 Hb_001675_290--Hb_007749_020 Hb_036029_020 Hb_036029_020 Hb_001675_290--Hb_036029_020 Hb_001369_190 Hb_001369_190 Hb_001675_290--Hb_001369_190 Hb_006026_020 Hb_006026_020 Hb_001675_290--Hb_006026_020 Hb_004970_100 Hb_004970_100 Hb_001675_290--Hb_004970_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.654846 1.03934 1.95227 0 0.109175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0581729 0 0.259661 0.347801

CAGE analysis