Hb_006054_040

Information

Type -
Description -
Location Contig6054: 65769-66250
Sequence    

Annotation

kegg
ID egr:104439925
description uncharacterized LOC104439925
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006054_040 0.0 - - -
2 Hb_000085_010 0.2405673144 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000186_310 0.2427354112 - - conserved hypothetical protein [Ricinus communis]
4 Hb_145745_040 0.2553293475 - - Cell wall-associated hydrolase [Medicago truncatula]
5 Hb_003388_070 0.2583136221 - - 60S ribosomal protein L32A [Hevea brasiliensis]
6 Hb_088080_020 0.2780813089 - - -
7 Hb_115823_010 0.2815833848 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000331_050 0.290152581 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
9 Hb_081529_010 0.2925971129 - - unnamed protein product [Vitis vinifera]
10 Hb_002046_130 0.2962803094 - - PREDICTED: UDP-sugar transporter sqv-7-like [Jatropha curcas]
11 Hb_003894_090 0.2989652425 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000331_530 0.3081528675 - - PREDICTED: callose synthase 10 isoform X1 [Jatropha curcas]
13 Hb_008775_030 0.3119843511 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
14 Hb_000120_630 0.3163868526 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
15 Hb_000020_080 0.3184912208 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
16 Hb_000422_070 0.3220427913 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005181_020 0.3232578873 - - Pectinesterase-2 precursor, putative [Ricinus communis]
18 Hb_000331_300 0.3238494772 - - PREDICTED: malate synthase, glyoxysomal [Jatropha curcas]
19 Hb_002942_170 0.3263801985 - - acyl carrier protein, putative [Ricinus communis]
20 Hb_007904_050 0.3276345266 - - hypothetical protein JCGZ_17883 [Jatropha curcas]

Gene co-expression network

sample Hb_006054_040 Hb_006054_040 Hb_000085_010 Hb_000085_010 Hb_006054_040--Hb_000085_010 Hb_000186_310 Hb_000186_310 Hb_006054_040--Hb_000186_310 Hb_145745_040 Hb_145745_040 Hb_006054_040--Hb_145745_040 Hb_003388_070 Hb_003388_070 Hb_006054_040--Hb_003388_070 Hb_088080_020 Hb_088080_020 Hb_006054_040--Hb_088080_020 Hb_115823_010 Hb_115823_010 Hb_006054_040--Hb_115823_010 Hb_000085_010--Hb_145745_040 Hb_003680_040 Hb_003680_040 Hb_000085_010--Hb_003680_040 Hb_000352_010 Hb_000352_010 Hb_000085_010--Hb_000352_010 Hb_081529_010 Hb_081529_010 Hb_000085_010--Hb_081529_010 Hb_012653_010 Hb_012653_010 Hb_000085_010--Hb_012653_010 Hb_002151_010 Hb_002151_010 Hb_000186_310--Hb_002151_010 Hb_000422_070 Hb_000422_070 Hb_000186_310--Hb_000422_070 Hb_004158_050 Hb_004158_050 Hb_000186_310--Hb_004158_050 Hb_008725_140 Hb_008725_140 Hb_000186_310--Hb_008725_140 Hb_001751_060 Hb_001751_060 Hb_000186_310--Hb_001751_060 Hb_000608_150 Hb_000608_150 Hb_145745_040--Hb_000608_150 Hb_003371_050 Hb_003371_050 Hb_145745_040--Hb_003371_050 Hb_000331_050 Hb_000331_050 Hb_145745_040--Hb_000331_050 Hb_000120_630 Hb_000120_630 Hb_145745_040--Hb_000120_630 Hb_145745_040--Hb_003388_070 Hb_005656_130 Hb_005656_130 Hb_003388_070--Hb_005656_130 Hb_000331_530 Hb_000331_530 Hb_003388_070--Hb_000331_530 Hb_000210_200 Hb_000210_200 Hb_003388_070--Hb_000210_200 Hb_004048_030 Hb_004048_030 Hb_003388_070--Hb_004048_030 Hb_004881_010 Hb_004881_010 Hb_088080_020--Hb_004881_010 Hb_006816_490 Hb_006816_490 Hb_088080_020--Hb_006816_490 Hb_001862_030 Hb_001862_030 Hb_088080_020--Hb_001862_030 Hb_002046_130 Hb_002046_130 Hb_088080_020--Hb_002046_130 Hb_169893_010 Hb_169893_010 Hb_088080_020--Hb_169893_010 Hb_001195_550 Hb_001195_550 Hb_088080_020--Hb_001195_550 Hb_007904_050 Hb_007904_050 Hb_115823_010--Hb_007904_050 Hb_003894_090 Hb_003894_090 Hb_115823_010--Hb_003894_090 Hb_005181_020 Hb_005181_020 Hb_115823_010--Hb_005181_020 Hb_002942_170 Hb_002942_170 Hb_115823_010--Hb_002942_170 Hb_022425_020 Hb_022425_020 Hb_115823_010--Hb_022425_020 Hb_141199_010 Hb_141199_010 Hb_115823_010--Hb_141199_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.236018 1.52884 0.620984 0 0.704773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.146647 0 0 0.260669

CAGE analysis