Hb_000210_200

Information

Type -
Description -
Location Contig210: 241773-248954
Sequence    

Annotation

kegg
ID rcu:RCOM_0437630
description protein binding protein, putative
nr
ID XP_012074334.1
description PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID B9T2S4
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0437630 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21750: 241958-248968 , PASA_asmbl_21751: 247809-247902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_200 0.0 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
2 Hb_000974_040 0.1420296147 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
3 Hb_007479_010 0.1685738407 - - Root phototropism protein, putative [Ricinus communis]
4 Hb_028227_060 0.1703519796 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
5 Hb_000028_150 0.1709388358 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
6 Hb_165330_010 0.1774095632 - - BnaUnng00840D [Brassica napus]
7 Hb_059567_010 0.179894265 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
8 Hb_000932_110 0.182353547 - - Root phototropism protein, putative [Ricinus communis]
9 Hb_001266_150 0.1827531516 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
10 Hb_000268_060 0.1843454741 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_005197_030 0.187403439 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH71-like isoform X2 [Populus euphratica]
12 Hb_002540_060 0.188570588 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
13 Hb_001231_010 0.1908478944 - - calcium-binding family protein [Populus trichocarpa]
14 Hb_000574_380 0.1932329297 - - hydrolase, putative [Ricinus communis]
15 Hb_003050_140 0.1948025778 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
16 Hb_000768_120 0.1949731844 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
17 Hb_137216_010 0.1959328614 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
18 Hb_000352_010 0.1980505208 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
19 Hb_001439_160 0.199148851 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
20 Hb_004785_210 0.2026468228 - - hypothetical protein JCGZ_25215 [Jatropha curcas]

Gene co-expression network

sample Hb_000210_200 Hb_000210_200 Hb_000974_040 Hb_000974_040 Hb_000210_200--Hb_000974_040 Hb_007479_010 Hb_007479_010 Hb_000210_200--Hb_007479_010 Hb_028227_060 Hb_028227_060 Hb_000210_200--Hb_028227_060 Hb_000028_150 Hb_000028_150 Hb_000210_200--Hb_000028_150 Hb_165330_010 Hb_165330_010 Hb_000210_200--Hb_165330_010 Hb_059567_010 Hb_059567_010 Hb_000210_200--Hb_059567_010 Hb_000974_040--Hb_028227_060 Hb_177281_010 Hb_177281_010 Hb_000974_040--Hb_177281_010 Hb_137216_010 Hb_137216_010 Hb_000974_040--Hb_137216_010 Hb_001135_070 Hb_001135_070 Hb_000974_040--Hb_001135_070 Hb_000393_040 Hb_000393_040 Hb_000974_040--Hb_000393_040 Hb_000123_360 Hb_000123_360 Hb_000974_040--Hb_000123_360 Hb_000768_120 Hb_000768_120 Hb_007479_010--Hb_000768_120 Hb_002495_090 Hb_002495_090 Hb_007479_010--Hb_002495_090 Hb_000134_040 Hb_000134_040 Hb_007479_010--Hb_000134_040 Hb_004855_070 Hb_004855_070 Hb_007479_010--Hb_004855_070 Hb_006681_020 Hb_006681_020 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_002007_120 Hb_002007_120 Hb_028227_060--Hb_002007_120 Hb_000648_070 Hb_000648_070 Hb_028227_060--Hb_000648_070 Hb_004884_100 Hb_004884_100 Hb_028227_060--Hb_004884_100 Hb_000268_060 Hb_000268_060 Hb_028227_060--Hb_000268_060 Hb_028227_060--Hb_137216_010 Hb_002540_060 Hb_002540_060 Hb_000028_150--Hb_002540_060 Hb_002986_140 Hb_002986_140 Hb_000028_150--Hb_002986_140 Hb_001343_120 Hb_001343_120 Hb_000028_150--Hb_001343_120 Hb_002435_090 Hb_002435_090 Hb_000028_150--Hb_002435_090 Hb_001442_050 Hb_001442_050 Hb_000028_150--Hb_001442_050 Hb_000500_330 Hb_000500_330 Hb_000028_150--Hb_000500_330 Hb_003077_010 Hb_003077_010 Hb_165330_010--Hb_003077_010 Hb_028872_130 Hb_028872_130 Hb_165330_010--Hb_028872_130 Hb_062773_010 Hb_062773_010 Hb_165330_010--Hb_062773_010 Hb_000574_380 Hb_000574_380 Hb_165330_010--Hb_000574_380 Hb_002121_030 Hb_002121_030 Hb_165330_010--Hb_002121_030 Hb_000431_080 Hb_000431_080 Hb_165330_010--Hb_000431_080 Hb_001266_150 Hb_001266_150 Hb_059567_010--Hb_001266_150 Hb_000925_150 Hb_000925_150 Hb_059567_010--Hb_000925_150 Hb_001140_190 Hb_001140_190 Hb_059567_010--Hb_001140_190 Hb_011457_120 Hb_011457_120 Hb_059567_010--Hb_011457_120 Hb_059567_010--Hb_000932_110 Hb_000958_160 Hb_000958_160 Hb_059567_010--Hb_000958_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21132 0.248777 28.7583 5.7964 0.123286 2.64008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207499 0.11429 0.527375 0.0649114 12.898

CAGE analysis