Hb_002762_030

Information

Type -
Description -
Location Contig2762: 41056-44838
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12370g
description hypothetical protein
nr
ID XP_006371499.1
description hypothetical protein POPTR_0019s12370g, partial [Populus trichocarpa]
swissprot
ID Q10S66
description Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1
trembl
ID U5FHB4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s12370g PE=4 SV=1
Gene Ontology
ID GO:0009056
description endochitinase pr4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_030 0.0 - - hypothetical protein POPTR_0019s12370g, partial [Populus trichocarpa]
2 Hb_001552_070 0.1476184957 - - EXS family protein [Populus trichocarpa]
3 Hb_003905_020 0.2182978743 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
4 Hb_000803_160 0.2234357051 - - hypothetical protein JCGZ_25955 [Jatropha curcas]
5 Hb_001969_100 0.2236665118 - - signal transducer, putative [Ricinus communis]
6 Hb_002307_190 0.2271340477 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
7 Hb_006916_080 0.23290718 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
8 Hb_000367_230 0.2374334028 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_002324_090 0.2469655611 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
10 Hb_137862_010 0.2510638369 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_000152_750 0.2613286313 - - peroxisomal biogenesis factor, putative [Ricinus communis]
12 Hb_000067_040 0.2645656563 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_002759_080 0.2676287547 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
14 Hb_010642_020 0.2679079229 - - NDH-dependent cyclic electron flow 1 isoform 2 [Theobroma cacao]
15 Hb_000261_470 0.2723933498 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
16 Hb_000393_040 0.2750397372 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
17 Hb_002762_020 0.2764028998 - - hypothetical protein VITISV_043202 [Vitis vinifera]
18 Hb_001133_100 0.2781774846 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
19 Hb_140465_010 0.2802663879 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
20 Hb_000009_510 0.2842236267 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]

Gene co-expression network

sample Hb_002762_030 Hb_002762_030 Hb_001552_070 Hb_001552_070 Hb_002762_030--Hb_001552_070 Hb_003905_020 Hb_003905_020 Hb_002762_030--Hb_003905_020 Hb_000803_160 Hb_000803_160 Hb_002762_030--Hb_000803_160 Hb_001969_100 Hb_001969_100 Hb_002762_030--Hb_001969_100 Hb_002307_190 Hb_002307_190 Hb_002762_030--Hb_002307_190 Hb_006916_080 Hb_006916_080 Hb_002762_030--Hb_006916_080 Hb_001552_070--Hb_003905_020 Hb_001552_070--Hb_001969_100 Hb_000367_230 Hb_000367_230 Hb_001552_070--Hb_000367_230 Hb_001552_070--Hb_002307_190 Hb_001552_070--Hb_006916_080 Hb_003905_020--Hb_002307_190 Hb_002759_080 Hb_002759_080 Hb_003905_020--Hb_002759_080 Hb_003905_020--Hb_006916_080 Hb_000393_040 Hb_000393_040 Hb_003905_020--Hb_000393_040 Hb_010638_010 Hb_010638_010 Hb_003905_020--Hb_010638_010 Hb_001379_120 Hb_001379_120 Hb_003905_020--Hb_001379_120 Hb_010642_020 Hb_010642_020 Hb_000803_160--Hb_010642_020 Hb_140465_010 Hb_140465_010 Hb_000803_160--Hb_140465_010 Hb_000803_160--Hb_002759_080 Hb_140360_010 Hb_140360_010 Hb_000803_160--Hb_140360_010 Hb_000637_070 Hb_000637_070 Hb_000803_160--Hb_000637_070 Hb_003026_040 Hb_003026_040 Hb_001969_100--Hb_003026_040 Hb_000261_470 Hb_000261_470 Hb_001969_100--Hb_000261_470 Hb_000525_070 Hb_000525_070 Hb_001969_100--Hb_000525_070 Hb_001133_100 Hb_001133_100 Hb_001969_100--Hb_001133_100 Hb_010407_090 Hb_010407_090 Hb_001969_100--Hb_010407_090 Hb_001969_100--Hb_006916_080 Hb_002307_190--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_002307_190--Hb_000174_080 Hb_137216_010 Hb_137216_010 Hb_002307_190--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_002307_190--Hb_002071_030 Hb_002307_190--Hb_006916_080 Hb_000099_050 Hb_000099_050 Hb_006916_080--Hb_000099_050 Hb_006916_080--Hb_000393_040 Hb_021531_010 Hb_021531_010 Hb_006916_080--Hb_021531_010 Hb_002485_050 Hb_002485_050 Hb_006916_080--Hb_002485_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0287685 0.053143 0.984941 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.198508 0.15609 0 0 1.04597

CAGE analysis