Hb_010642_020

Information

Type -
Description -
Location Contig10642: 3298-4532
Sequence    

Annotation

kegg
ID tcc:TCM_028838
description NDH-dependent cyclic electron flow 1 isoform 1
nr
ID XP_007024241.1
description NDH-dependent cyclic electron flow 1 isoform 2 [Theobroma cacao]
swissprot
ID Q9LU21
description Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana GN=PNSB3 PE=2 SV=1
trembl
ID A0A061GBS9
description NDH-dependent cyclic electron flow 1 isoform 2 OS=Theobroma cacao GN=TCM_028838 PE=4 SV=1
Gene Ontology
ID GO:0009535
description ndh-dependent cyclic electron flow 1 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02029: 3255-4500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010642_020 0.0 - - NDH-dependent cyclic electron flow 1 isoform 2 [Theobroma cacao]
2 Hb_000067_040 0.1355045769 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_031862_160 0.1608054827 - - unnamed protein product [Vitis vinifera]
4 Hb_011900_030 0.1612408562 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
5 Hb_007761_040 0.1808365007 - - carbonyl reductase, putative [Ricinus communis]
6 Hb_002571_110 0.1972300576 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
7 Hb_000479_340 0.2086551057 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
8 Hb_000188_010 0.211629196 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
9 Hb_180985_010 0.2155514508 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
10 Hb_000189_460 0.21682008 - - -
11 Hb_014870_010 0.2179901795 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
12 Hb_000084_270 0.2183426943 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
13 Hb_000186_020 0.2189201377 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
14 Hb_001662_090 0.2194713067 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001935_050 0.2219714531 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
16 Hb_007676_090 0.2237406695 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
17 Hb_006775_100 0.2238454995 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_003428_020 0.2247551963 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
19 Hb_000037_210 0.2253938532 - - -
20 Hb_009083_060 0.2256080217 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]

Gene co-expression network

sample Hb_010642_020 Hb_010642_020 Hb_000067_040 Hb_000067_040 Hb_010642_020--Hb_000067_040 Hb_031862_160 Hb_031862_160 Hb_010642_020--Hb_031862_160 Hb_011900_030 Hb_011900_030 Hb_010642_020--Hb_011900_030 Hb_007761_040 Hb_007761_040 Hb_010642_020--Hb_007761_040 Hb_002571_110 Hb_002571_110 Hb_010642_020--Hb_002571_110 Hb_000479_340 Hb_000479_340 Hb_010642_020--Hb_000479_340 Hb_000188_010 Hb_000188_010 Hb_000067_040--Hb_000188_010 Hb_001662_090 Hb_001662_090 Hb_000067_040--Hb_001662_090 Hb_180985_010 Hb_180985_010 Hb_000067_040--Hb_180985_010 Hb_006775_100 Hb_006775_100 Hb_000067_040--Hb_006775_100 Hb_002253_020 Hb_002253_020 Hb_000067_040--Hb_002253_020 Hb_031862_160--Hb_011900_030 Hb_031862_160--Hb_007761_040 Hb_031862_160--Hb_002571_110 Hb_000037_210 Hb_000037_210 Hb_031862_160--Hb_000037_210 Hb_009083_060 Hb_009083_060 Hb_031862_160--Hb_009083_060 Hb_003428_020 Hb_003428_020 Hb_031862_160--Hb_003428_020 Hb_011900_030--Hb_007761_040 Hb_000189_460 Hb_000189_460 Hb_011900_030--Hb_000189_460 Hb_002977_020 Hb_002977_020 Hb_011900_030--Hb_002977_020 Hb_001021_020 Hb_001021_020 Hb_011900_030--Hb_001021_020 Hb_001242_030 Hb_001242_030 Hb_011900_030--Hb_001242_030 Hb_007761_040--Hb_002571_110 Hb_014870_010 Hb_014870_010 Hb_007761_040--Hb_014870_010 Hb_001935_050 Hb_001935_050 Hb_007761_040--Hb_001935_050 Hb_000864_040 Hb_000864_040 Hb_007761_040--Hb_000864_040 Hb_000084_270 Hb_000084_270 Hb_007761_040--Hb_000084_270 Hb_002571_110--Hb_000084_270 Hb_000186_020 Hb_000186_020 Hb_002571_110--Hb_000186_020 Hb_002571_110--Hb_014870_010 Hb_007676_090 Hb_007676_090 Hb_002571_110--Hb_007676_090 Hb_002571_110--Hb_003428_020 Hb_065256_010 Hb_065256_010 Hb_000479_340--Hb_065256_010 Hb_005888_060 Hb_005888_060 Hb_000479_340--Hb_005888_060 Hb_005511_080 Hb_005511_080 Hb_000479_340--Hb_005511_080 Hb_023904_010 Hb_023904_010 Hb_000479_340--Hb_023904_010 Hb_000386_010 Hb_000386_010 Hb_000479_340--Hb_000386_010 Hb_002561_040 Hb_002561_040 Hb_000479_340--Hb_002561_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.143315 1.742 0 0.0405193 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0933365 0 0 0 1.002

CAGE analysis