Hb_000067_040

Information

Type -
Description -
Location Contig67: 149212-153173
Sequence    

Annotation

kegg
ID mdm:103424726
description TMV resistance protein N-like
nr
ID XP_012071386.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067ELG2
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0049931mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000067_040 0.0 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_010642_020 0.1355045769 - - NDH-dependent cyclic electron flow 1 isoform 2 [Theobroma cacao]
3 Hb_000188_010 0.1418748469 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
4 Hb_001662_090 0.164630084 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_180985_010 0.1709383178 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
6 Hb_006775_100 0.174824625 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_002253_020 0.1756999473 - - PREDICTED: callose synthase 5 [Jatropha curcas]
8 Hb_011716_140 0.1757531862 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
9 Hb_030565_020 0.1777552197 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
10 Hb_002561_040 0.1787690137 - - Photosynthetic electron transfer C [Theobroma cacao]
11 Hb_001916_110 0.1840736444 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
12 Hb_002078_280 0.1845213833 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
13 Hb_031862_160 0.1850809014 - - unnamed protein product [Vitis vinifera]
14 Hb_001085_280 0.185194676 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
15 Hb_006261_020 0.191515773 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
16 Hb_011900_030 0.1938300889 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
17 Hb_006555_020 0.1944036242 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
18 Hb_000030_070 0.1947518245 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007761_040 0.1951008317 - - carbonyl reductase, putative [Ricinus communis]
20 Hb_004235_070 0.1975707778 - - acyl carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000067_040 Hb_000067_040 Hb_010642_020 Hb_010642_020 Hb_000067_040--Hb_010642_020 Hb_000188_010 Hb_000188_010 Hb_000067_040--Hb_000188_010 Hb_001662_090 Hb_001662_090 Hb_000067_040--Hb_001662_090 Hb_180985_010 Hb_180985_010 Hb_000067_040--Hb_180985_010 Hb_006775_100 Hb_006775_100 Hb_000067_040--Hb_006775_100 Hb_002253_020 Hb_002253_020 Hb_000067_040--Hb_002253_020 Hb_031862_160 Hb_031862_160 Hb_010642_020--Hb_031862_160 Hb_011900_030 Hb_011900_030 Hb_010642_020--Hb_011900_030 Hb_007761_040 Hb_007761_040 Hb_010642_020--Hb_007761_040 Hb_002571_110 Hb_002571_110 Hb_010642_020--Hb_002571_110 Hb_000479_340 Hb_000479_340 Hb_010642_020--Hb_000479_340 Hb_002078_280 Hb_002078_280 Hb_000188_010--Hb_002078_280 Hb_000030_070 Hb_000030_070 Hb_000188_010--Hb_000030_070 Hb_006261_020 Hb_006261_020 Hb_000188_010--Hb_006261_020 Hb_003921_020 Hb_003921_020 Hb_000188_010--Hb_003921_020 Hb_004235_070 Hb_004235_070 Hb_000188_010--Hb_004235_070 Hb_096267_010 Hb_096267_010 Hb_000188_010--Hb_096267_010 Hb_002805_200 Hb_002805_200 Hb_001662_090--Hb_002805_200 Hb_001864_050 Hb_001864_050 Hb_001662_090--Hb_001864_050 Hb_005305_140 Hb_005305_140 Hb_001662_090--Hb_005305_140 Hb_001662_090--Hb_006775_100 Hb_001916_110 Hb_001916_110 Hb_001662_090--Hb_001916_110 Hb_000386_010 Hb_000386_010 Hb_001662_090--Hb_000386_010 Hb_180985_010--Hb_000188_010 Hb_000482_160 Hb_000482_160 Hb_180985_010--Hb_000482_160 Hb_180985_010--Hb_001864_050 Hb_180985_010--Hb_001916_110 Hb_180985_010--Hb_003921_020 Hb_001287_020 Hb_001287_020 Hb_180985_010--Hb_001287_020 Hb_006775_100--Hb_001916_110 Hb_011716_140 Hb_011716_140 Hb_006775_100--Hb_011716_140 Hb_006775_100--Hb_002078_280 Hb_006775_100--Hb_002805_200 Hb_003683_170 Hb_003683_170 Hb_006775_100--Hb_003683_170 Hb_030565_020 Hb_030565_020 Hb_002253_020--Hb_030565_020 Hb_002253_020--Hb_011716_140 Hb_000334_020 Hb_000334_020 Hb_002253_020--Hb_000334_020 Hb_002253_020--Hb_006261_020 Hb_002253_020--Hb_004235_070 Hb_001033_080 Hb_001033_080 Hb_002253_020--Hb_001033_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0700885 1.33555 0.0440319 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0959771 0 0 0 0.733843

CAGE analysis