Hb_001033_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1033: 254136-254843
Sequence    

Annotation

kegg
ID rcu:RCOM_0864880
description Transcriptional regulator SUPERMAN, putative
nr
ID XP_002519824.1
description Transcriptional regulator SUPERMAN, putative [Ricinus communis]
swissprot
ID Q9LHS9
description Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2
trembl
ID B9S1F9
description Palmate-like pentafoliata 1 transcription factor OS=Ricinus communis GN=PALM1 PE=4 SV=1
Gene Ontology
ID GO:0046872
description palmate-like pentafoliata 1 transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001033_080 0.0 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
2 Hb_000334_020 0.0280822748 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
3 Hb_000016_140 0.0456917859 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
4 Hb_002028_070 0.0617501099 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
5 Hb_009189_090 0.0628655372 - - protein phosphatase-2c, putative [Ricinus communis]
6 Hb_005357_210 0.0630712365 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
7 Hb_002006_080 0.0633380146 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
8 Hb_000847_040 0.0643220712 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
9 Hb_002253_020 0.0652359913 - - PREDICTED: callose synthase 5 [Jatropha curcas]
10 Hb_006355_100 0.0657185428 - - hypothetical protein glysoja_002455 [Glycine soja]
11 Hb_001284_050 0.0692521799 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
12 Hb_025048_050 0.072164847 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
13 Hb_008032_010 0.0727653773 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_000023_170 0.0734526189 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
15 Hb_048476_090 0.080567067 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000979_210 0.08059802 - - conserved hypothetical protein [Ricinus communis]
17 Hb_030565_020 0.0821248537 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
18 Hb_000740_010 0.0822081331 - - cytochrome P450, putative [Ricinus communis]
19 Hb_004235_070 0.0833940679 - - acyl carrier protein, putative [Ricinus communis]
20 Hb_006261_020 0.0841390831 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]

Gene co-expression network

sample Hb_001033_080 Hb_001033_080 Hb_000334_020 Hb_000334_020 Hb_001033_080--Hb_000334_020 Hb_000016_140 Hb_000016_140 Hb_001033_080--Hb_000016_140 Hb_002028_070 Hb_002028_070 Hb_001033_080--Hb_002028_070 Hb_009189_090 Hb_009189_090 Hb_001033_080--Hb_009189_090 Hb_005357_210 Hb_005357_210 Hb_001033_080--Hb_005357_210 Hb_002006_080 Hb_002006_080 Hb_001033_080--Hb_002006_080 Hb_000334_020--Hb_000016_140 Hb_001284_050 Hb_001284_050 Hb_000334_020--Hb_001284_050 Hb_002253_020 Hb_002253_020 Hb_000334_020--Hb_002253_020 Hb_048476_090 Hb_048476_090 Hb_000334_020--Hb_048476_090 Hb_001085_280 Hb_001085_280 Hb_000334_020--Hb_001085_280 Hb_000016_140--Hb_001284_050 Hb_002701_100 Hb_002701_100 Hb_000016_140--Hb_002701_100 Hb_000016_140--Hb_001085_280 Hb_006355_100 Hb_006355_100 Hb_000016_140--Hb_006355_100 Hb_000847_040 Hb_000847_040 Hb_002028_070--Hb_000847_040 Hb_025048_050 Hb_025048_050 Hb_002028_070--Hb_025048_050 Hb_002028_070--Hb_005357_210 Hb_000243_360 Hb_000243_360 Hb_002028_070--Hb_000243_360 Hb_002028_070--Hb_002006_080 Hb_000023_170 Hb_000023_170 Hb_009189_090--Hb_000023_170 Hb_008032_010 Hb_008032_010 Hb_009189_090--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_009189_090--Hb_132840_060 Hb_003702_010 Hb_003702_010 Hb_009189_090--Hb_003702_010 Hb_009189_090--Hb_006355_100 Hb_009189_090--Hb_005357_210 Hb_005357_210--Hb_025048_050 Hb_001946_070 Hb_001946_070 Hb_005357_210--Hb_001946_070 Hb_005357_210--Hb_000023_170 Hb_005357_210--Hb_003702_010 Hb_001329_060 Hb_001329_060 Hb_005357_210--Hb_001329_060 Hb_002006_080--Hb_000847_040 Hb_011316_080 Hb_011316_080 Hb_002006_080--Hb_011316_080 Hb_000979_210 Hb_000979_210 Hb_002006_080--Hb_000979_210 Hb_000740_010 Hb_000740_010 Hb_002006_080--Hb_000740_010 Hb_004235_070 Hb_004235_070 Hb_002006_080--Hb_004235_070 Hb_071557_010 Hb_071557_010 Hb_002006_080--Hb_071557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.863253 0.0611752 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.371991

CAGE analysis