Hb_000243_360

Information

Type transcription factor
Description TF Family: NAC
Location Contig243: 321678-325650
Sequence    

Annotation

kegg
ID vvi:100243701
description NAC domain-containing protein 7
nr
ID XP_010649056.1
description PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
swissprot
ID Q9SL41
description NAC domain-containing protein 37 OS=Arabidopsis thaliana GN=NAC037 PE=1 SV=1
trembl
ID F6GWP2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03110 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25406: 323922-325247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_360 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
2 Hb_002028_070 0.0660134437 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
3 Hb_089140_130 0.0671912241 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
4 Hb_001153_170 0.0671915409 - - PREDICTED: protein HOTHEAD [Populus euphratica]
5 Hb_001946_070 0.0687836008 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_006594_030 0.0691659708 - - -
7 Hb_000136_120 0.0695539051 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
8 Hb_000167_150 0.0706203167 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
9 Hb_011316_080 0.0718772289 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_025048_050 0.0721507096 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
11 Hb_000847_040 0.0733179288 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
12 Hb_009771_010 0.0741948233 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
13 Hb_001546_140 0.0819606201 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
14 Hb_000979_210 0.0846928097 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005357_210 0.0858007627 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
16 Hb_001329_060 0.0878496771 - - Polygalacturonase precursor, putative [Ricinus communis]
17 Hb_002259_020 0.0886100817 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
18 Hb_002929_030 0.0898133248 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
19 Hb_007617_030 0.0908250959 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
20 Hb_002006_080 0.0911730513 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_000243_360 Hb_000243_360 Hb_002028_070 Hb_002028_070 Hb_000243_360--Hb_002028_070 Hb_089140_130 Hb_089140_130 Hb_000243_360--Hb_089140_130 Hb_001153_170 Hb_001153_170 Hb_000243_360--Hb_001153_170 Hb_001946_070 Hb_001946_070 Hb_000243_360--Hb_001946_070 Hb_006594_030 Hb_006594_030 Hb_000243_360--Hb_006594_030 Hb_000136_120 Hb_000136_120 Hb_000243_360--Hb_000136_120 Hb_000847_040 Hb_000847_040 Hb_002028_070--Hb_000847_040 Hb_001033_080 Hb_001033_080 Hb_002028_070--Hb_001033_080 Hb_025048_050 Hb_025048_050 Hb_002028_070--Hb_025048_050 Hb_005357_210 Hb_005357_210 Hb_002028_070--Hb_005357_210 Hb_002006_080 Hb_002006_080 Hb_002028_070--Hb_002006_080 Hb_089140_130--Hb_001153_170 Hb_011316_080 Hb_011316_080 Hb_089140_130--Hb_011316_080 Hb_009771_010 Hb_009771_010 Hb_089140_130--Hb_009771_010 Hb_001546_140 Hb_001546_140 Hb_089140_130--Hb_001546_140 Hb_089140_130--Hb_000847_040 Hb_089140_130--Hb_006594_030 Hb_001153_170--Hb_009771_010 Hb_001153_170--Hb_011316_080 Hb_001153_170--Hb_001546_140 Hb_001153_170--Hb_006594_030 Hb_007617_030 Hb_007617_030 Hb_001153_170--Hb_007617_030 Hb_001946_070--Hb_025048_050 Hb_001329_060 Hb_001329_060 Hb_001946_070--Hb_001329_060 Hb_001946_070--Hb_005357_210 Hb_000167_150 Hb_000167_150 Hb_001946_070--Hb_000167_150 Hb_001946_070--Hb_000136_120 Hb_001946_070--Hb_006594_030 Hb_006594_030--Hb_000136_120 Hb_006594_030--Hb_000167_150 Hb_006594_030--Hb_009771_010 Hb_006594_030--Hb_007617_030 Hb_000136_120--Hb_000167_150 Hb_000136_120--Hb_001153_170 Hb_000136_120--Hb_025048_050 Hb_000136_120--Hb_089140_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0503147 0 7.25342 1.15135 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0362478 0 0 2.98174

CAGE analysis