Hb_002028_070

Information

Type -
Description -
Location Contig2028: 102592-104403
Sequence    

Annotation

kegg
ID rcu:RCOM_0708150
description hypothetical protein
nr
ID XP_012077163.1
description PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07572 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20744: 102385-104531 , PASA_asmbl_20745: 104781-105035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_070 0.0 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
2 Hb_000847_040 0.0611045085 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
3 Hb_001033_080 0.0617501099 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
4 Hb_025048_050 0.0645653124 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
5 Hb_005357_210 0.0655197145 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
6 Hb_000243_360 0.0660134437 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
7 Hb_002006_080 0.0700455555 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
8 Hb_001946_070 0.073701305 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_011316_080 0.0771062036 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_002259_020 0.0784564824 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
11 Hb_000979_210 0.0794461573 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000334_020 0.0801498062 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
13 Hb_089140_130 0.0812244972 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
14 Hb_000210_210 0.0824675694 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
15 Hb_009189_090 0.0834244245 - - protein phosphatase-2c, putative [Ricinus communis]
16 Hb_000023_170 0.0875724105 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
17 Hb_001153_170 0.0887387264 - - PREDICTED: protein HOTHEAD [Populus euphratica]
18 Hb_011512_100 0.0921415325 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
19 Hb_009771_010 0.0924931752 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
20 Hb_000136_120 0.0933097839 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002028_070 Hb_002028_070 Hb_000847_040 Hb_000847_040 Hb_002028_070--Hb_000847_040 Hb_001033_080 Hb_001033_080 Hb_002028_070--Hb_001033_080 Hb_025048_050 Hb_025048_050 Hb_002028_070--Hb_025048_050 Hb_005357_210 Hb_005357_210 Hb_002028_070--Hb_005357_210 Hb_000243_360 Hb_000243_360 Hb_002028_070--Hb_000243_360 Hb_002006_080 Hb_002006_080 Hb_002028_070--Hb_002006_080 Hb_011316_080 Hb_011316_080 Hb_000847_040--Hb_011316_080 Hb_000847_040--Hb_002006_080 Hb_089140_130 Hb_089140_130 Hb_000847_040--Hb_089140_130 Hb_000979_210 Hb_000979_210 Hb_000847_040--Hb_000979_210 Hb_001153_170 Hb_001153_170 Hb_000847_040--Hb_001153_170 Hb_009771_010 Hb_009771_010 Hb_000847_040--Hb_009771_010 Hb_000334_020 Hb_000334_020 Hb_001033_080--Hb_000334_020 Hb_000016_140 Hb_000016_140 Hb_001033_080--Hb_000016_140 Hb_009189_090 Hb_009189_090 Hb_001033_080--Hb_009189_090 Hb_001033_080--Hb_005357_210 Hb_001033_080--Hb_002006_080 Hb_001946_070 Hb_001946_070 Hb_025048_050--Hb_001946_070 Hb_025048_050--Hb_005357_210 Hb_001329_060 Hb_001329_060 Hb_025048_050--Hb_001329_060 Hb_000167_150 Hb_000167_150 Hb_025048_050--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_025048_050--Hb_000136_120 Hb_025048_050--Hb_000847_040 Hb_005357_210--Hb_001946_070 Hb_000023_170 Hb_000023_170 Hb_005357_210--Hb_000023_170 Hb_005357_210--Hb_009189_090 Hb_003702_010 Hb_003702_010 Hb_005357_210--Hb_003702_010 Hb_005357_210--Hb_001329_060 Hb_000243_360--Hb_089140_130 Hb_000243_360--Hb_001153_170 Hb_000243_360--Hb_001946_070 Hb_006594_030 Hb_006594_030 Hb_000243_360--Hb_006594_030 Hb_000243_360--Hb_000136_120 Hb_002006_080--Hb_011316_080 Hb_002006_080--Hb_000979_210 Hb_000740_010 Hb_000740_010 Hb_002006_080--Hb_000740_010 Hb_004235_070 Hb_004235_070 Hb_002006_080--Hb_004235_070 Hb_071557_010 Hb_071557_010 Hb_002006_080--Hb_071557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.083341 0 10.9726 1.11701 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.61146

CAGE analysis