Hb_001552_070

Information

Type -
Description -
Location Contig1552: 54473-59599
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08980g
description EXS family protein
nr
ID XP_006379673.1
description EXS family protein [Populus trichocarpa]
swissprot
ID Q6R8G0
description Phosphate transporter PHO1 homolog 10 OS=Arabidopsis thaliana GN=PHO1-H10 PE=2 SV=1
trembl
ID U5G231
description EXS family protein OS=Populus trichocarpa GN=POPTR_0008s08980g PE=4 SV=1
Gene Ontology
ID GO:0016021
description phosphate transporter pho1 homolog 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001552_070 0.0 - - EXS family protein [Populus trichocarpa]
2 Hb_002762_030 0.1476184957 - - hypothetical protein POPTR_0019s12370g, partial [Populus trichocarpa]
3 Hb_003905_020 0.2450834559 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
4 Hb_001969_100 0.2603545457 - - signal transducer, putative [Ricinus communis]
5 Hb_000367_230 0.2695691628 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_002307_190 0.273368272 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
7 Hb_006916_080 0.2846527662 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
8 Hb_001386_030 0.2881272418 - - PREDICTED: peroxidase 55 [Jatropha curcas]
9 Hb_000803_160 0.2938972954 - - hypothetical protein JCGZ_25955 [Jatropha curcas]
10 Hb_000067_040 0.2970568635 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_003026_040 0.3038097584 - - Uncharacterized protein TCM_007861 [Theobroma cacao]
12 Hb_002324_090 0.3067486254 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
13 Hb_006916_060 0.309447891 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
14 Hb_010642_020 0.3130692902 - - NDH-dependent cyclic electron flow 1 isoform 2 [Theobroma cacao]
15 Hb_000261_470 0.3132546152 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
16 Hb_137862_010 0.314687864 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_000675_090 0.3168175819 - - hypothetical protein SORBIDRAFT_03g028570 [Sorghum bicolor]
18 Hb_000393_040 0.3208651831 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
19 Hb_124540_010 0.3254518235 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
20 Hb_010904_020 0.3254629451 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]

Gene co-expression network

sample Hb_001552_070 Hb_001552_070 Hb_002762_030 Hb_002762_030 Hb_001552_070--Hb_002762_030 Hb_003905_020 Hb_003905_020 Hb_001552_070--Hb_003905_020 Hb_001969_100 Hb_001969_100 Hb_001552_070--Hb_001969_100 Hb_000367_230 Hb_000367_230 Hb_001552_070--Hb_000367_230 Hb_002307_190 Hb_002307_190 Hb_001552_070--Hb_002307_190 Hb_006916_080 Hb_006916_080 Hb_001552_070--Hb_006916_080 Hb_002762_030--Hb_003905_020 Hb_000803_160 Hb_000803_160 Hb_002762_030--Hb_000803_160 Hb_002762_030--Hb_001969_100 Hb_002762_030--Hb_002307_190 Hb_002762_030--Hb_006916_080 Hb_003905_020--Hb_002307_190 Hb_002759_080 Hb_002759_080 Hb_003905_020--Hb_002759_080 Hb_003905_020--Hb_006916_080 Hb_000393_040 Hb_000393_040 Hb_003905_020--Hb_000393_040 Hb_010638_010 Hb_010638_010 Hb_003905_020--Hb_010638_010 Hb_001379_120 Hb_001379_120 Hb_003905_020--Hb_001379_120 Hb_003026_040 Hb_003026_040 Hb_001969_100--Hb_003026_040 Hb_000261_470 Hb_000261_470 Hb_001969_100--Hb_000261_470 Hb_000525_070 Hb_000525_070 Hb_001969_100--Hb_000525_070 Hb_001133_100 Hb_001133_100 Hb_001969_100--Hb_001133_100 Hb_010407_090 Hb_010407_090 Hb_001969_100--Hb_010407_090 Hb_001969_100--Hb_006916_080 Hb_000367_230--Hb_000261_470 Hb_011537_140 Hb_011537_140 Hb_000367_230--Hb_011537_140 Hb_180985_010 Hb_180985_010 Hb_000367_230--Hb_180985_010 Hb_000367_230--Hb_000393_040 Hb_000367_230--Hb_002307_190 Hb_000648_070 Hb_000648_070 Hb_000367_230--Hb_000648_070 Hb_002307_190--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_002307_190--Hb_000174_080 Hb_137216_010 Hb_137216_010 Hb_002307_190--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_002307_190--Hb_002071_030 Hb_002307_190--Hb_006916_080 Hb_000099_050 Hb_000099_050 Hb_006916_080--Hb_000099_050 Hb_006916_080--Hb_000393_040 Hb_021531_010 Hb_021531_010 Hb_006916_080--Hb_021531_010 Hb_002485_050 Hb_002485_050 Hb_006916_080--Hb_002485_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0927487 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0232519 0.0182951 0 0 0.0772661

CAGE analysis