Hb_173808_010

Information

Type -
Description -
Location Contig173808: 1394-5670
Sequence    

Annotation

kegg
ID rcu:RCOM_0681080
description GTP binding protein, putative
nr
ID XP_012083941.1
description PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
swissprot
ID O81283
description Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1
trembl
ID A0A067JV91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18877 PE=4 SV=1
Gene Ontology
ID GO:0005525
description translocase of chloroplast chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16531: 1220-4973 , PASA_asmbl_16533: 5625-5736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173808_010 0.0 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
2 Hb_001080_030 0.1316736276 - - AMP dependent ligase, putative [Ricinus communis]
3 Hb_000640_260 0.1347827315 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
4 Hb_003029_140 0.1394387968 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_052946_010 0.1424563114 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
6 Hb_000731_290 0.1442900128 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_078477_060 0.1476302539 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
8 Hb_000404_040 0.1487669456 - - conserved hypothetical protein [Ricinus communis]
9 Hb_166127_030 0.151958253 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_007576_150 0.1524131736 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
11 Hb_159809_090 0.1532711421 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
12 Hb_000529_140 0.1541227374 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002016_050 0.1547703144 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
14 Hb_024714_080 0.154796767 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
15 Hb_000997_140 0.1551660275 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
16 Hb_000406_190 0.1563108125 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_008511_140 0.1578953125 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
18 Hb_002811_190 0.1595168075 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
19 Hb_010757_030 0.1602670377 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_021409_190 0.1633670497 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_173808_010 Hb_173808_010 Hb_001080_030 Hb_001080_030 Hb_173808_010--Hb_001080_030 Hb_000640_260 Hb_000640_260 Hb_173808_010--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_173808_010--Hb_003029_140 Hb_052946_010 Hb_052946_010 Hb_173808_010--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_173808_010--Hb_000731_290 Hb_078477_060 Hb_078477_060 Hb_173808_010--Hb_078477_060 Hb_001080_030--Hb_052946_010 Hb_001080_030--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_003226_190 Hb_003226_190 Hb_001080_030--Hb_003226_190 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000640_260--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_000640_260--Hb_000189_250 Hb_000640_260--Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_003029_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_003029_140--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_003029_140--Hb_008616_040 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_003029_140--Hb_052946_010 Hb_052946_010--Hb_000731_290 Hb_000025_500 Hb_000025_500 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_052946_010--Hb_008511_140 Hb_000731_290--Hb_000025_500 Hb_001341_010 Hb_001341_010 Hb_000731_290--Hb_001341_010 Hb_000167_120 Hb_000167_120 Hb_000731_290--Hb_000167_120 Hb_003549_050 Hb_003549_050 Hb_000731_290--Hb_003549_050 Hb_000014_190 Hb_000014_190 Hb_078477_060--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_078477_060--Hb_000963_090 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_078477_060--Hb_001080_030 Hb_001080_150 Hb_001080_150 Hb_078477_060--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_078477_060--Hb_001793_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.46463 12.0401 8.23175 6.39006 1.5346 3.71534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.17905 0.858233 6.28598 10.6156 41.7724

CAGE analysis