Hb_000039_200

Information

Type -
Description -
Location Contig39: 241068-241319
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03330g
description POPTRDRAFT_555484; hypothetical protein
nr
ID KDP20875.1
description hypothetical protein JCGZ_21346 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21346 PE=4 SV=1
Gene Ontology
ID GO:0009570
description wound induced partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39063: 241010-241352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_200 0.0 - - hypothetical protein JCGZ_21346 [Jatropha curcas]
2 Hb_007621_010 0.2184360231 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
3 Hb_004449_020 0.2241157269 - - PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
4 Hb_005455_010 0.2301284731 - - PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X1 [Jatropha curcas]
5 Hb_000318_400 0.2441988086 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003095_110 0.2484138446 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
7 Hb_000699_050 0.2588879604 - - -
8 Hb_006922_070 0.2636818868 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
9 Hb_001210_100 0.2702662762 - - Gibberellin 20 oxidase, putative [Ricinus communis]
10 Hb_033312_080 0.2705001926 - - aldose-1-epimerase, putative [Ricinus communis]
11 Hb_001437_280 0.2728091803 - - AMP dependent CoA ligase, putative [Ricinus communis]
12 Hb_000340_050 0.2757007986 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
13 Hb_002475_150 0.2768505539 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
14 Hb_178968_080 0.2789930716 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
15 Hb_006810_010 0.2805135085 - - hypothetical protein B456_012G018200 [Gossypium raimondii]
16 Hb_000707_010 0.2808848783 - - hypothetical protein JCGZ_25098 [Jatropha curcas]
17 Hb_001534_040 0.2823552789 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
18 Hb_007130_010 0.2847690808 - - -
19 Hb_000453_240 0.2857832548 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
20 Hb_134911_010 0.285844607 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000039_200 Hb_000039_200 Hb_007621_010 Hb_007621_010 Hb_000039_200--Hb_007621_010 Hb_004449_020 Hb_004449_020 Hb_000039_200--Hb_004449_020 Hb_005455_010 Hb_005455_010 Hb_000039_200--Hb_005455_010 Hb_000318_400 Hb_000318_400 Hb_000039_200--Hb_000318_400 Hb_003095_110 Hb_003095_110 Hb_000039_200--Hb_003095_110 Hb_000699_050 Hb_000699_050 Hb_000039_200--Hb_000699_050 Hb_001437_280 Hb_001437_280 Hb_007621_010--Hb_001437_280 Hb_001863_180 Hb_001863_180 Hb_007621_010--Hb_001863_180 Hb_033312_080 Hb_033312_080 Hb_007621_010--Hb_033312_080 Hb_000042_090 Hb_000042_090 Hb_007621_010--Hb_000042_090 Hb_003659_010 Hb_003659_010 Hb_007621_010--Hb_003659_010 Hb_007621_010--Hb_005455_010 Hb_000340_050 Hb_000340_050 Hb_004449_020--Hb_000340_050 Hb_006810_010 Hb_006810_010 Hb_004449_020--Hb_006810_010 Hb_001019_210 Hb_001019_210 Hb_004449_020--Hb_001019_210 Hb_000484_040 Hb_000484_040 Hb_004449_020--Hb_000484_040 Hb_000012_040 Hb_000012_040 Hb_004449_020--Hb_000012_040 Hb_002811_240 Hb_002811_240 Hb_005455_010--Hb_002811_240 Hb_138229_010 Hb_138229_010 Hb_005455_010--Hb_138229_010 Hb_005455_010--Hb_000699_050 Hb_001226_100 Hb_001226_100 Hb_005455_010--Hb_001226_100 Hb_007007_130 Hb_007007_130 Hb_005455_010--Hb_007007_130 Hb_000152_770 Hb_000152_770 Hb_005455_010--Hb_000152_770 Hb_000318_400--Hb_003095_110 Hb_002016_130 Hb_002016_130 Hb_000318_400--Hb_002016_130 Hb_000776_020 Hb_000776_020 Hb_000318_400--Hb_000776_020 Hb_000574_030 Hb_000574_030 Hb_000318_400--Hb_000574_030 Hb_005288_060 Hb_005288_060 Hb_000318_400--Hb_005288_060 Hb_000567_150 Hb_000567_150 Hb_000318_400--Hb_000567_150 Hb_004218_310 Hb_004218_310 Hb_003095_110--Hb_004218_310 Hb_011576_010 Hb_011576_010 Hb_003095_110--Hb_011576_010 Hb_003095_110--Hb_000567_150 Hb_000087_120 Hb_000087_120 Hb_003095_110--Hb_000087_120 Hb_000230_020 Hb_000230_020 Hb_003095_110--Hb_000230_020 Hb_009296_060 Hb_009296_060 Hb_000699_050--Hb_009296_060 Hb_000343_040 Hb_000343_040 Hb_000699_050--Hb_000343_040 Hb_000473_070 Hb_000473_070 Hb_000699_050--Hb_000473_070 Hb_000457_130 Hb_000457_130 Hb_000699_050--Hb_000457_130 Hb_001366_050 Hb_001366_050 Hb_000699_050--Hb_001366_050 Hb_000753_180 Hb_000753_180 Hb_000699_050--Hb_000753_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.350878 5.46669 1.12024 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 2.42141 1.23906 7.26965 6.6384

CAGE analysis