Hb_014879_010

Information

Type -
Description -
Location Contig14879: 4617-9231
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014879_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001206_010 0.2398476372 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_012150_060 0.2667201875 - - -
4 Hb_025236_030 0.2809563563 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_000172_130 0.3068435976 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
6 Hb_000101_260 0.3150963332 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_004981_010 0.382637034 - - -
8 Hb_000711_020 0.3835916363 - - major allergen Pru ar 1-like [Jatropha curcas]
9 Hb_069033_010 0.3857896059 desease resistance Gene Name: DUF720 hypothetical protein CICLE_v10002052mg [Citrus clementina]
10 Hb_024411_010 0.3871754621 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_003717_020 0.3883453464 - - -
12 Hb_000045_060 0.3914116377 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_006040_040 0.39168772 - - Putative mitochondrial protein [Glycine soja]
14 Hb_038044_020 0.3981697141 - - -
15 Hb_004195_220 0.4052743516 - - hypothetical protein PRUPE_ppa005288mg [Prunus persica]
16 Hb_057451_040 0.408885706 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_013080_010 0.41508109 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_086607_010 0.4153333499 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_001021_050 0.416494448 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_001758_030 0.4172596907 - - hypothetical protein JCGZ_09181 [Jatropha curcas]

Gene co-expression network

sample Hb_014879_010 Hb_014879_010 Hb_001206_010 Hb_001206_010 Hb_014879_010--Hb_001206_010 Hb_012150_060 Hb_012150_060 Hb_014879_010--Hb_012150_060 Hb_025236_030 Hb_025236_030 Hb_014879_010--Hb_025236_030 Hb_000172_130 Hb_000172_130 Hb_014879_010--Hb_000172_130 Hb_000101_260 Hb_000101_260 Hb_014879_010--Hb_000101_260 Hb_004981_010 Hb_004981_010 Hb_014879_010--Hb_004981_010 Hb_001206_010--Hb_000172_130 Hb_024411_010 Hb_024411_010 Hb_001206_010--Hb_024411_010 Hb_057451_040 Hb_057451_040 Hb_001206_010--Hb_057451_040 Hb_038044_020 Hb_038044_020 Hb_001206_010--Hb_038044_020 Hb_001062_020 Hb_001062_020 Hb_001206_010--Hb_001062_020 Hb_001842_110 Hb_001842_110 Hb_012150_060--Hb_001842_110 Hb_000236_330 Hb_000236_330 Hb_012150_060--Hb_000236_330 Hb_182750_010 Hb_182750_010 Hb_012150_060--Hb_182750_010 Hb_012150_060--Hb_001206_010 Hb_153258_020 Hb_153258_020 Hb_012150_060--Hb_153258_020 Hb_025236_030--Hb_001206_010 Hb_164019_010 Hb_164019_010 Hb_025236_030--Hb_164019_010 Hb_025236_030--Hb_012150_060 Hb_155256_020 Hb_155256_020 Hb_025236_030--Hb_155256_020 Hb_000940_140 Hb_000940_140 Hb_025236_030--Hb_000940_140 Hb_004195_220 Hb_004195_220 Hb_000172_130--Hb_004195_220 Hb_167183_010 Hb_167183_010 Hb_000172_130--Hb_167183_010 Hb_000172_130--Hb_057451_040 Hb_143874_010 Hb_143874_010 Hb_000172_130--Hb_143874_010 Hb_151320_010 Hb_151320_010 Hb_000172_130--Hb_151320_010 Hb_000711_020 Hb_000711_020 Hb_000101_260--Hb_000711_020 Hb_012338_030 Hb_012338_030 Hb_000101_260--Hb_012338_030 Hb_000101_260--Hb_001206_010 Hb_001660_020 Hb_001660_020 Hb_000101_260--Hb_001660_020 Hb_010874_040 Hb_010874_040 Hb_000101_260--Hb_010874_040 Hb_003717_020 Hb_003717_020 Hb_004981_010--Hb_003717_020 Hb_065395_020 Hb_065395_020 Hb_004981_010--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_004981_010--Hb_001021_050 Hb_001758_030 Hb_001758_030 Hb_004981_010--Hb_001758_030 Hb_181402_010 Hb_181402_010 Hb_004981_010--Hb_181402_010 Hb_000045_060 Hb_000045_060 Hb_004981_010--Hb_000045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0217384 0 0 0 0.0158639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0151062 0 0.0168567

CAGE analysis