Hb_000940_140

Information

Type -
Description -
Location Contig940: 201269-203734
Sequence    

Annotation

kegg
ID sot:102604542
description uncharacterized LOC102604542
nr
ID XP_012066659.1
description PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_140 0.0 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
2 Hb_003636_040 0.1451534622 - - mitochondrial translational initiation factor, putative [Ricinus communis]
3 Hb_001172_090 0.3418646583 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_063405_020 0.3455827008 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
5 Hb_069251_010 0.3530626372 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000690_120 0.3639170373 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
7 Hb_123046_010 0.3687480044 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
8 Hb_153051_010 0.3695152497 - - -
9 Hb_159036_010 0.3700001588 - - -
10 Hb_133820_010 0.3759745586 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_020334_010 0.3770919146 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_025236_030 0.380201955 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
13 Hb_079067_010 0.380707445 - - PREDICTED: protein SPT2 homolog [Malus domestica]
14 Hb_000640_030 0.3808203412 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_021888_070 0.3810470909 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
16 Hb_002918_050 0.3838859299 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
17 Hb_026239_010 0.3840137719 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_000827_060 0.3845454638 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
19 Hb_011310_080 0.3852107067 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
20 Hb_010977_010 0.3875223198 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000940_140 Hb_000940_140 Hb_003636_040 Hb_003636_040 Hb_000940_140--Hb_003636_040 Hb_001172_090 Hb_001172_090 Hb_000940_140--Hb_001172_090 Hb_063405_020 Hb_063405_020 Hb_000940_140--Hb_063405_020 Hb_069251_010 Hb_069251_010 Hb_000940_140--Hb_069251_010 Hb_000690_120 Hb_000690_120 Hb_000940_140--Hb_000690_120 Hb_123046_010 Hb_123046_010 Hb_000940_140--Hb_123046_010 Hb_003636_040--Hb_063405_020 Hb_000640_030 Hb_000640_030 Hb_003636_040--Hb_000640_030 Hb_003636_040--Hb_123046_010 Hb_067769_010 Hb_067769_010 Hb_003636_040--Hb_067769_010 Hb_003636_040--Hb_069251_010 Hb_010977_010 Hb_010977_010 Hb_001172_090--Hb_010977_010 Hb_162633_010 Hb_162633_010 Hb_001172_090--Hb_162633_010 Hb_019656_010 Hb_019656_010 Hb_001172_090--Hb_019656_010 Hb_000258_340 Hb_000258_340 Hb_001172_090--Hb_000258_340 Hb_086077_020 Hb_086077_020 Hb_001172_090--Hb_086077_020 Hb_131102_010 Hb_131102_010 Hb_001172_090--Hb_131102_010 Hb_002360_030 Hb_002360_030 Hb_063405_020--Hb_002360_030 Hb_011310_080 Hb_011310_080 Hb_063405_020--Hb_011310_080 Hb_002188_140 Hb_002188_140 Hb_063405_020--Hb_002188_140 Hb_000001_130 Hb_000001_130 Hb_063405_020--Hb_000001_130 Hb_001114_040 Hb_001114_040 Hb_063405_020--Hb_001114_040 Hb_007054_050 Hb_007054_050 Hb_063405_020--Hb_007054_050 Hb_001780_120 Hb_001780_120 Hb_069251_010--Hb_001780_120 Hb_020334_010 Hb_020334_010 Hb_069251_010--Hb_020334_010 Hb_010080_080 Hb_010080_080 Hb_069251_010--Hb_010080_080 Hb_003294_100 Hb_003294_100 Hb_069251_010--Hb_003294_100 Hb_029510_040 Hb_029510_040 Hb_069251_010--Hb_029510_040 Hb_001357_010 Hb_001357_010 Hb_069251_010--Hb_001357_010 Hb_106552_040 Hb_106552_040 Hb_000690_120--Hb_106552_040 Hb_000329_290 Hb_000329_290 Hb_000690_120--Hb_000329_290 Hb_000078_080 Hb_000078_080 Hb_000690_120--Hb_000078_080 Hb_008803_040 Hb_008803_040 Hb_000690_120--Hb_008803_040 Hb_001863_020 Hb_001863_020 Hb_000690_120--Hb_001863_020 Hb_000310_100 Hb_000310_100 Hb_000690_120--Hb_000310_100 Hb_123046_010--Hb_131102_010 Hb_133820_010 Hb_133820_010 Hb_123046_010--Hb_133820_010 Hb_003523_040 Hb_003523_040 Hb_123046_010--Hb_003523_040 Hb_154726_010 Hb_154726_010 Hb_123046_010--Hb_154726_010 Hb_159036_010 Hb_159036_010 Hb_123046_010--Hb_159036_010 Hb_170559_010 Hb_170559_010 Hb_123046_010--Hb_170559_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0129465 0 0 0 0.0129414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0592735 0 0.0438817 0.0186028 0.0488702

CAGE analysis