Hb_000078_080

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig78: 147196-148720
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12790g
description POPTRDRAFT_578920; hypothetical protein
nr
ID KDP30258.1
description hypothetical protein JCGZ_17040 [Jatropha curcas]
swissprot
ID Q93WC4
description Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2
trembl
ID A0A067K5I1
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_17040 PE=3 SV=1
Gene Ontology
ID GO:0010033
description auxin-responsive protein iaa29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57891: 147303-147683 , PASA_asmbl_57892: 147998-148858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_080 0.0 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_17040 [Jatropha curcas]
2 Hb_009486_040 0.1439944822 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000230_290 0.1573300493 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_000705_250 0.1609084006 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
5 Hb_003025_140 0.1661214368 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001393_010 0.1781777157 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
7 Hb_011224_100 0.1806124303 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000329_290 0.1826237494 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
9 Hb_034585_010 0.1852881239 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
10 Hb_000318_130 0.1864127922 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000331_490 0.1866653371 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
12 Hb_114310_110 0.188196243 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_003941_030 0.1897551385 - - Protease ecfE, putative [Ricinus communis]
14 Hb_003728_090 0.1907210725 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
15 Hb_171215_010 0.1941810372 - - vesicle-associated membrane protein, putative [Ricinus communis]
16 Hb_032202_040 0.1943441802 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
17 Hb_005511_150 0.1944340256 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
18 Hb_003607_070 0.1949414231 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
19 Hb_163145_030 0.1951199088 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
20 Hb_008226_030 0.1964107026 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]

Gene co-expression network

sample Hb_000078_080 Hb_000078_080 Hb_009486_040 Hb_009486_040 Hb_000078_080--Hb_009486_040 Hb_000230_290 Hb_000230_290 Hb_000078_080--Hb_000230_290 Hb_000705_250 Hb_000705_250 Hb_000078_080--Hb_000705_250 Hb_003025_140 Hb_003025_140 Hb_000078_080--Hb_003025_140 Hb_001393_010 Hb_001393_010 Hb_000078_080--Hb_001393_010 Hb_011224_100 Hb_011224_100 Hb_000078_080--Hb_011224_100 Hb_009486_040--Hb_000230_290 Hb_003952_060 Hb_003952_060 Hb_009486_040--Hb_003952_060 Hb_009486_040--Hb_003025_140 Hb_003607_070 Hb_003607_070 Hb_009486_040--Hb_003607_070 Hb_002055_040 Hb_002055_040 Hb_009486_040--Hb_002055_040 Hb_000331_490 Hb_000331_490 Hb_000230_290--Hb_000331_490 Hb_001916_090 Hb_001916_090 Hb_000230_290--Hb_001916_090 Hb_021495_020 Hb_021495_020 Hb_000230_290--Hb_021495_020 Hb_001089_060 Hb_001089_060 Hb_000230_290--Hb_001089_060 Hb_007820_010 Hb_007820_010 Hb_000230_290--Hb_007820_010 Hb_000318_130 Hb_000318_130 Hb_000705_250--Hb_000318_130 Hb_004218_190 Hb_004218_190 Hb_000705_250--Hb_004218_190 Hb_000705_250--Hb_009486_040 Hb_005511_150 Hb_005511_150 Hb_000705_250--Hb_005511_150 Hb_000705_250--Hb_003025_140 Hb_007527_010 Hb_007527_010 Hb_000705_250--Hb_007527_010 Hb_114893_040 Hb_114893_040 Hb_003025_140--Hb_114893_040 Hb_163145_030 Hb_163145_030 Hb_003025_140--Hb_163145_030 Hb_011861_050 Hb_011861_050 Hb_003025_140--Hb_011861_050 Hb_005147_080 Hb_005147_080 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030 Hb_001178_030 Hb_001178_030 Hb_001393_010--Hb_001178_030 Hb_001279_040 Hb_001279_040 Hb_001393_010--Hb_001279_040 Hb_008226_030 Hb_008226_030 Hb_001393_010--Hb_008226_030 Hb_000806_030 Hb_000806_030 Hb_001393_010--Hb_000806_030 Hb_034585_010 Hb_034585_010 Hb_001393_010--Hb_034585_010 Hb_000367_020 Hb_000367_020 Hb_001393_010--Hb_000367_020 Hb_011606_020 Hb_011606_020 Hb_011224_100--Hb_011606_020 Hb_002174_040 Hb_002174_040 Hb_011224_100--Hb_002174_040 Hb_000116_130 Hb_000116_130 Hb_011224_100--Hb_000116_130 Hb_011224_100--Hb_021495_020 Hb_043792_040 Hb_043792_040 Hb_011224_100--Hb_043792_040 Hb_012573_050 Hb_012573_050 Hb_011224_100--Hb_012573_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19367 5.64752 6.48572 8.01509 2.8143 3.59578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18969 1.48246 14.9393 2.06178 21.52

CAGE analysis