Hb_010080_080

Information

Type -
Description -
Location Contig10080: 99935-111875
Sequence    

Annotation

kegg
ID rcu:RCOM_1600500
description hypothetical protein
nr
ID XP_002510645.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8K2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000563_550 0.1909157182 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
3 Hb_005043_010 0.2006916173 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_000172_560 0.202831304 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
5 Hb_003475_010 0.2093487718 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
6 Hb_000865_060 0.2149858741 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
7 Hb_005701_010 0.2187107187 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
8 Hb_001002_030 0.2222042356 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
9 Hb_000094_130 0.2233886093 - - PREDICTED: random slug protein 5 [Jatropha curcas]
10 Hb_005188_090 0.2244870743 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
11 Hb_007416_270 0.2263038037 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
12 Hb_001214_120 0.2265683707 - - -
13 Hb_001277_090 0.231145929 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
14 Hb_005839_110 0.2328839478 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
15 Hb_069251_010 0.2336974207 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_000016_190 0.2365918009 - - ABC transporter B family member 28 [Glycine soja]
17 Hb_000327_220 0.2383733816 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
18 Hb_000853_410 0.2387889422 - - -
19 Hb_004785_140 0.2388436993 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
20 Hb_000789_220 0.2390187474 - - phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_010080_080 Hb_010080_080 Hb_000563_550 Hb_000563_550 Hb_010080_080--Hb_000563_550 Hb_005043_010 Hb_005043_010 Hb_010080_080--Hb_005043_010 Hb_000172_560 Hb_000172_560 Hb_010080_080--Hb_000172_560 Hb_003475_010 Hb_003475_010 Hb_010080_080--Hb_003475_010 Hb_000865_060 Hb_000865_060 Hb_010080_080--Hb_000865_060 Hb_005701_010 Hb_005701_010 Hb_010080_080--Hb_005701_010 Hb_000563_550--Hb_005701_010 Hb_000563_550--Hb_005043_010 Hb_148209_110 Hb_148209_110 Hb_000563_550--Hb_148209_110 Hb_002603_160 Hb_002603_160 Hb_000563_550--Hb_002603_160 Hb_002551_020 Hb_002551_020 Hb_000563_550--Hb_002551_020 Hb_002897_060 Hb_002897_060 Hb_000563_550--Hb_002897_060 Hb_005188_090 Hb_005188_090 Hb_005043_010--Hb_005188_090 Hb_007416_270 Hb_007416_270 Hb_005043_010--Hb_007416_270 Hb_000236_140 Hb_000236_140 Hb_005043_010--Hb_000236_140 Hb_005043_010--Hb_000172_560 Hb_000705_240 Hb_000705_240 Hb_005043_010--Hb_000705_240 Hb_000172_560--Hb_005188_090 Hb_000172_560--Hb_000236_140 Hb_000172_560--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000172_560--Hb_000479_130 Hb_001189_050 Hb_001189_050 Hb_000172_560--Hb_001189_050 Hb_003687_100 Hb_003687_100 Hb_000172_560--Hb_003687_100 Hb_004226_020 Hb_004226_020 Hb_003475_010--Hb_004226_020 Hb_004968_100 Hb_004968_100 Hb_003475_010--Hb_004968_100 Hb_004116_200 Hb_004116_200 Hb_003475_010--Hb_004116_200 Hb_000049_310 Hb_000049_310 Hb_003475_010--Hb_000049_310 Hb_000001_140 Hb_000001_140 Hb_003475_010--Hb_000001_140 Hb_003475_010--Hb_005043_010 Hb_000865_060--Hb_007416_270 Hb_001090_050 Hb_001090_050 Hb_000865_060--Hb_001090_050 Hb_001002_030 Hb_001002_030 Hb_000865_060--Hb_001002_030 Hb_000865_060--Hb_005188_090 Hb_011242_040 Hb_011242_040 Hb_000865_060--Hb_011242_040 Hb_168773_010 Hb_168773_010 Hb_000865_060--Hb_168773_010 Hb_005701_010--Hb_002603_160 Hb_005701_010--Hb_002551_020 Hb_005701_010--Hb_005188_090 Hb_000069_460 Hb_000069_460 Hb_005701_010--Hb_000069_460 Hb_003147_050 Hb_003147_050 Hb_005701_010--Hb_003147_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0148386 0.0366691 0.0167782 0 0.0653937 0.0486533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13468 0.0397423 0.252774 0.0420715 0.0563735

CAGE analysis