Hb_000705_240

Information

Type -
Description -
Location Contig705: 135802-139364
Sequence    

Annotation

kegg
ID rcu:RCOM_0732550
description DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
nr
ID XP_002520498.1
description DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis]
swissprot
ID P46279
description DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1
trembl
ID B9S3C9
description DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus communis GN=RCOM_0732550 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-directed rna polymerase ii subunit rpb7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55083: 135839-139337
cDNA
(Sanger)
(ID:Location)		 011_L03.ab1: 135869-139307

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_240 0.0 - - DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis]
2 Hb_031862_110 0.1079322259 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_000676_150 0.1083442408 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
4 Hb_000143_030 0.1097547269 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_172932_010 0.1195529408 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000482_090 0.1195578829 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
7 Hb_000334_150 0.1217957782 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000398_040 0.1222367127 - - Auxin response factor, putative [Ricinus communis]
9 Hb_005043_010 0.1236955833 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_001014_040 0.1245244927 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
11 Hb_114336_020 0.1249339354 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
12 Hb_001811_030 0.1268446475 - - Beta-ureidopropionase, putative [Ricinus communis]
13 Hb_000431_010 0.1282396391 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
14 Hb_048476_050 0.1309479309 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
15 Hb_005183_120 0.1314404502 - - protein translocase, putative [Ricinus communis]
16 Hb_001454_190 0.1318812263 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
17 Hb_009113_070 0.1324713489 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
18 Hb_002769_050 0.1335192908 - - PREDICTED: endophilin-A1 [Jatropha curcas]
19 Hb_002221_040 0.1359090372 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
20 Hb_116898_010 0.1366931232 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_240 Hb_000705_240 Hb_031862_110 Hb_031862_110 Hb_000705_240--Hb_031862_110 Hb_000676_150 Hb_000676_150 Hb_000705_240--Hb_000676_150 Hb_000143_030 Hb_000143_030 Hb_000705_240--Hb_000143_030 Hb_172932_010 Hb_172932_010 Hb_000705_240--Hb_172932_010 Hb_000482_090 Hb_000482_090 Hb_000705_240--Hb_000482_090 Hb_000334_150 Hb_000334_150 Hb_000705_240--Hb_000334_150 Hb_000431_010 Hb_000431_010 Hb_031862_110--Hb_000431_010 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_001014_040 Hb_001014_040 Hb_031862_110--Hb_001014_040 Hb_006711_060 Hb_006711_060 Hb_031862_110--Hb_006711_060 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_002056_060 Hb_002056_060 Hb_031862_110--Hb_002056_060 Hb_005183_120 Hb_005183_120 Hb_000676_150--Hb_005183_120 Hb_034380_020 Hb_034380_020 Hb_000676_150--Hb_034380_020 Hb_000676_150--Hb_000482_090 Hb_011942_090 Hb_011942_090 Hb_000676_150--Hb_011942_090 Hb_000165_160 Hb_000165_160 Hb_000676_150--Hb_000165_160 Hb_127552_030 Hb_127552_030 Hb_000676_150--Hb_127552_030 Hb_000143_030--Hb_005183_120 Hb_009113_070 Hb_009113_070 Hb_000143_030--Hb_009113_070 Hb_001898_160 Hb_001898_160 Hb_000143_030--Hb_001898_160 Hb_000047_030 Hb_000047_030 Hb_000143_030--Hb_000047_030 Hb_000143_030--Hb_000676_150 Hb_004116_140 Hb_004116_140 Hb_000143_030--Hb_004116_140 Hb_011534_030 Hb_011534_030 Hb_172932_010--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_172932_010--Hb_001454_190 Hb_172932_010--Hb_000617_150 Hb_172932_010--Hb_009113_070 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_002005_020 Hb_002005_020 Hb_000482_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000482_090--Hb_004218_110 Hb_001959_210 Hb_001959_210 Hb_000482_090--Hb_001959_210 Hb_002759_060 Hb_002759_060 Hb_000482_090--Hb_002759_060 Hb_004254_120 Hb_004254_120 Hb_000482_090--Hb_004254_120 Hb_000482_090--Hb_172932_010 Hb_000334_150--Hb_000165_160 Hb_000334_150--Hb_005183_120 Hb_000334_150--Hb_001014_040 Hb_050514_010 Hb_050514_010 Hb_000334_150--Hb_050514_010 Hb_003086_150 Hb_003086_150 Hb_000334_150--Hb_003086_150 Hb_002374_100 Hb_002374_100 Hb_000334_150--Hb_002374_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0547 1.44996 7.7405 4.06297 8.94577 10.7474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9412 17.3889 28.7727 12.9809 8.09716

CAGE analysis