Hb_004968_100

Information

Type -
Description -
Location Contig4968: 106119-111048
Sequence    

Annotation

kegg
ID vvi:104879859
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A5C0F5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040772 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004968_100 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_004226_020 0.1010712346 - - -
3 Hb_003475_010 0.1444098182 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_006076_010 0.1483175511 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
5 Hb_000062_560 0.1640389738 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001221_170 0.1654791209 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
7 Hb_002518_140 0.1675974293 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
8 Hb_000001_140 0.16778103 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
9 Hb_010795_010 0.1687858416 - - protein with unknown function [Ricinus communis]
10 Hb_000116_300 0.1691011298 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_163145_020 0.1725665823 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
12 Hb_001277_330 0.1728642535 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
13 Hb_019654_100 0.1741286703 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
14 Hb_000230_380 0.1742346677 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
15 Hb_000116_010 0.1752565685 - - isocitrate dehydrogenase, putative [Ricinus communis]
16 Hb_007672_050 0.1767786243 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_013405_030 0.1773077745 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000622_090 0.1788949599 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
19 Hb_000510_140 0.1801674804 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
20 Hb_000805_290 0.1815707919 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004968_100 Hb_004968_100 Hb_004226_020 Hb_004226_020 Hb_004968_100--Hb_004226_020 Hb_003475_010 Hb_003475_010 Hb_004968_100--Hb_003475_010 Hb_006076_010 Hb_006076_010 Hb_004968_100--Hb_006076_010 Hb_000062_560 Hb_000062_560 Hb_004968_100--Hb_000062_560 Hb_001221_170 Hb_001221_170 Hb_004968_100--Hb_001221_170 Hb_002518_140 Hb_002518_140 Hb_004968_100--Hb_002518_140 Hb_034299_060 Hb_034299_060 Hb_004226_020--Hb_034299_060 Hb_005357_150 Hb_005357_150 Hb_004226_020--Hb_005357_150 Hb_163145_020 Hb_163145_020 Hb_004226_020--Hb_163145_020 Hb_000429_170 Hb_000429_170 Hb_004226_020--Hb_000429_170 Hb_002973_080 Hb_002973_080 Hb_004226_020--Hb_002973_080 Hb_003475_010--Hb_004226_020 Hb_004116_200 Hb_004116_200 Hb_003475_010--Hb_004116_200 Hb_000049_310 Hb_000049_310 Hb_003475_010--Hb_000049_310 Hb_000001_140 Hb_000001_140 Hb_003475_010--Hb_000001_140 Hb_005043_010 Hb_005043_010 Hb_003475_010--Hb_005043_010 Hb_000116_300 Hb_000116_300 Hb_006076_010--Hb_000116_300 Hb_001946_410 Hb_001946_410 Hb_006076_010--Hb_001946_410 Hb_046198_010 Hb_046198_010 Hb_006076_010--Hb_046198_010 Hb_000567_380 Hb_000567_380 Hb_006076_010--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_006076_010--Hb_000116_010 Hb_034013_020 Hb_034013_020 Hb_000062_560--Hb_034013_020 Hb_000500_100 Hb_000500_100 Hb_000062_560--Hb_000500_100 Hb_000705_160 Hb_000705_160 Hb_000062_560--Hb_000705_160 Hb_003582_040 Hb_003582_040 Hb_000062_560--Hb_003582_040 Hb_000417_310 Hb_000417_310 Hb_000062_560--Hb_000417_310 Hb_019654_100 Hb_019654_100 Hb_001221_170--Hb_019654_100 Hb_153258_010 Hb_153258_010 Hb_001221_170--Hb_153258_010 Hb_010795_010 Hb_010795_010 Hb_001221_170--Hb_010795_010 Hb_000041_150 Hb_000041_150 Hb_001221_170--Hb_000041_150 Hb_003862_050 Hb_003862_050 Hb_001221_170--Hb_003862_050 Hb_001245_070 Hb_001245_070 Hb_001221_170--Hb_001245_070 Hb_001277_330 Hb_001277_330 Hb_002518_140--Hb_001277_330 Hb_002518_140--Hb_010795_010 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_171900_080 Hb_171900_080 Hb_002518_140--Hb_171900_080 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196553 0.128797 0.0909813 0.0471965 0.344147 0.0578665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246015 0.174209 0.476139 0.061655 0.12243

CAGE analysis