Hb_000062_560

Information

Type -
Description -
Location Contig62: 390663-391872
Sequence    

Annotation

kegg
ID rcu:RCOM_1080910
description hypothetical protein
nr
ID XP_002514948.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMH9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_560 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_034013_020 0.1582904411 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
3 Hb_004968_100 0.1640389738 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_000500_100 0.1782589217 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
5 Hb_000705_160 0.1793289628 - - hypothetical protein CISIN_1g042743mg [Citrus sinensis]
6 Hb_003582_040 0.1810607154 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
7 Hb_000417_310 0.1823009578 - - uncharacterized protein LOC100272531 [Zea mays]
8 Hb_007426_180 0.18456721 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
9 Hb_000212_350 0.1868213822 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
10 Hb_164926_030 0.1881576094 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
11 Hb_006487_070 0.1897304876 - - PREDICTED: rop guanine nucleotide exchange factor 14 [Jatropha curcas]
12 Hb_011224_110 0.1911675245 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
13 Hb_002518_140 0.1914994861 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
14 Hb_010407_180 0.1919091526 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
15 Hb_006647_020 0.1919522641 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_001621_150 0.1920077659 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
17 Hb_002043_030 0.193792758 - - hypothetical protein RCOM_1486170 [Ricinus communis]
18 Hb_015198_020 0.1952033223 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000111_360 0.1956119683 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004225_030 0.1959583552 - - hypothetical protein F383_15788 [Gossypium arboreum]

Gene co-expression network

sample Hb_000062_560 Hb_000062_560 Hb_034013_020 Hb_034013_020 Hb_000062_560--Hb_034013_020 Hb_004968_100 Hb_004968_100 Hb_000062_560--Hb_004968_100 Hb_000500_100 Hb_000500_100 Hb_000062_560--Hb_000500_100 Hb_000705_160 Hb_000705_160 Hb_000062_560--Hb_000705_160 Hb_003582_040 Hb_003582_040 Hb_000062_560--Hb_003582_040 Hb_000417_310 Hb_000417_310 Hb_000062_560--Hb_000417_310 Hb_005162_070 Hb_005162_070 Hb_034013_020--Hb_005162_070 Hb_001946_330 Hb_001946_330 Hb_034013_020--Hb_001946_330 Hb_001898_160 Hb_001898_160 Hb_034013_020--Hb_001898_160 Hb_015198_020 Hb_015198_020 Hb_034013_020--Hb_015198_020 Hb_002027_040 Hb_002027_040 Hb_034013_020--Hb_002027_040 Hb_002799_110 Hb_002799_110 Hb_034013_020--Hb_002799_110 Hb_004226_020 Hb_004226_020 Hb_004968_100--Hb_004226_020 Hb_003475_010 Hb_003475_010 Hb_004968_100--Hb_003475_010 Hb_006076_010 Hb_006076_010 Hb_004968_100--Hb_006076_010 Hb_001221_170 Hb_001221_170 Hb_004968_100--Hb_001221_170 Hb_002518_140 Hb_002518_140 Hb_004968_100--Hb_002518_140 Hb_007426_180 Hb_007426_180 Hb_000500_100--Hb_007426_180 Hb_005116_160 Hb_005116_160 Hb_000500_100--Hb_005116_160 Hb_001552_020 Hb_001552_020 Hb_000500_100--Hb_001552_020 Hb_002184_110 Hb_002184_110 Hb_000500_100--Hb_002184_110 Hb_005463_100 Hb_005463_100 Hb_000500_100--Hb_005463_100 Hb_002256_030 Hb_002256_030 Hb_000500_100--Hb_002256_030 Hb_003992_170 Hb_003992_170 Hb_000705_160--Hb_003992_170 Hb_017110_010 Hb_017110_010 Hb_000705_160--Hb_017110_010 Hb_000836_040 Hb_000836_040 Hb_000705_160--Hb_000836_040 Hb_000749_270 Hb_000749_270 Hb_000705_160--Hb_000749_270 Hb_000705_160--Hb_005162_070 Hb_010407_180 Hb_010407_180 Hb_003582_040--Hb_010407_180 Hb_000592_020 Hb_000592_020 Hb_003582_040--Hb_000592_020 Hb_000141_020 Hb_000141_020 Hb_003582_040--Hb_000141_020 Hb_000147_040 Hb_000147_040 Hb_003582_040--Hb_000147_040 Hb_000258_330 Hb_000258_330 Hb_003582_040--Hb_000258_330 Hb_005569_020 Hb_005569_020 Hb_003582_040--Hb_005569_020 Hb_029799_010 Hb_029799_010 Hb_000417_310--Hb_029799_010 Hb_000359_020 Hb_000359_020 Hb_000417_310--Hb_000359_020 Hb_000398_010 Hb_000398_010 Hb_000417_310--Hb_000398_010 Hb_000907_080 Hb_000907_080 Hb_000417_310--Hb_000907_080 Hb_003862_050 Hb_003862_050 Hb_000417_310--Hb_003862_050 Hb_000417_310--Hb_001221_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311993 0.232342 0.15967 0.101624 0.203435 0.0611813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.398191 0.250432 0.559287 0.025461 0.247994

CAGE analysis