Hb_000359_020

Information

Type -
Description -
Location Contig359: 29588-38734
Sequence    

Annotation

kegg
ID rcu:RCOM_0536450
description amine oxidase, putative (EC:1.4.3.4)
nr
ID XP_002521588.1
description amine oxidase, putative [Ricinus communis]
swissprot
ID Q9SKX5
description Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1
trembl
ID B9S6G9
description Amine oxidase, putative OS=Ricinus communis GN=RCOM_0536450 PE=4 SV=1
Gene Ontology
ID GO:0016491
description probable polyamine oxidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37010: 29608-31515 , PASA_asmbl_37011: 29608-30943 , PASA_asmbl_37012: 32446-37627 , PASA_asmbl_37013: 33122-33309 , PASA_asmbl_37014: 33725-33893 , PASA_asmbl_37015: 35139-35346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_020 0.0 - - amine oxidase, putative [Ricinus communis]
2 Hb_012508_030 0.0940197597 - - PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
3 Hb_001439_150 0.111342858 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
4 Hb_001360_040 0.1123401448 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
5 Hb_002620_010 0.1147142097 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
6 Hb_002685_140 0.1158684444 - - PREDICTED: membrin-11 [Jatropha curcas]
7 Hb_019654_100 0.11964496 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
8 Hb_003862_050 0.1206306466 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
9 Hb_000417_310 0.121773593 - - uncharacterized protein LOC100272531 [Zea mays]
10 Hb_000175_440 0.121794509 - - signal peptidase family protein [Populus trichocarpa]
11 Hb_002027_130 0.121925114 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
12 Hb_000130_380 0.1220521083 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
13 Hb_001934_030 0.1238676656 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
14 Hb_000318_190 0.1240827487 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
15 Hb_000710_020 0.1241603705 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
16 Hb_000436_070 0.1243184286 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
17 Hb_007813_040 0.1257428295 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
18 Hb_010795_010 0.1278332604 - - protein with unknown function [Ricinus communis]
19 Hb_001623_420 0.1284025418 - - nucleotide binding protein, putative [Ricinus communis]
20 Hb_000123_120 0.1288718941 - - actin depolymerizing factor 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000359_020 Hb_000359_020 Hb_012508_030 Hb_012508_030 Hb_000359_020--Hb_012508_030 Hb_001439_150 Hb_001439_150 Hb_000359_020--Hb_001439_150 Hb_001360_040 Hb_001360_040 Hb_000359_020--Hb_001360_040 Hb_002620_010 Hb_002620_010 Hb_000359_020--Hb_002620_010 Hb_002685_140 Hb_002685_140 Hb_000359_020--Hb_002685_140 Hb_019654_100 Hb_019654_100 Hb_000359_020--Hb_019654_100 Hb_000318_190 Hb_000318_190 Hb_012508_030--Hb_000318_190 Hb_012508_030--Hb_019654_100 Hb_003862_050 Hb_003862_050 Hb_012508_030--Hb_003862_050 Hb_001934_030 Hb_001934_030 Hb_012508_030--Hb_001934_030 Hb_012508_030--Hb_001439_150 Hb_007951_060 Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_001396_180 Hb_001396_180 Hb_001360_040--Hb_001396_180 Hb_003732_020 Hb_003732_020 Hb_001360_040--Hb_003732_020 Hb_000761_020 Hb_000761_020 Hb_001360_040--Hb_000761_020 Hb_003376_040 Hb_003376_040 Hb_001360_040--Hb_003376_040 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_007813_040 Hb_007813_040 Hb_002620_010--Hb_007813_040 Hb_000808_270 Hb_000808_270 Hb_002620_010--Hb_000808_270 Hb_002620_010--Hb_000318_190 Hb_003175_010 Hb_003175_010 Hb_002620_010--Hb_003175_010 Hb_143629_210 Hb_143629_210 Hb_002620_010--Hb_143629_210 Hb_000030_300 Hb_000030_300 Hb_002620_010--Hb_000030_300 Hb_002685_140--Hb_000327_120 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_019654_100--Hb_003862_050 Hb_000754_060 Hb_000754_060 Hb_019654_100--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_019654_100--Hb_000120_950 Hb_010795_010 Hb_010795_010 Hb_019654_100--Hb_010795_010 Hb_175338_030 Hb_175338_030 Hb_019654_100--Hb_175338_030 Hb_019654_100--Hb_000436_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.714 101.365 168.788 66.4559 243.264 147.533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.902 161.187 285.408 58.327 30.2629

CAGE analysis