Hb_000318_190

Information

Type -
Description -
Location Contig318: 180702-196306
Sequence    

Annotation

kegg
ID rcu:RCOM_0773970
description ATP binding protein, putative
nr
ID KDP38246.1
description hypothetical protein JCGZ_04889 [Jatropha curcas]
swissprot
ID Q27IK6
description Phragmoplast orienting kinesin 2 OS=Arabidopsis thaliana GN=POK2 PE=2 SV=1
trembl
ID A0A067KPZ0
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_04889 PE=3 SV=1
Gene Ontology
ID GO:0005871
description phragmoplast orienting kinesin 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33510: 180615-182121 , PASA_asmbl_33511: 183065-184548 , PASA_asmbl_33512: 183577-184551 , PASA_asmbl_33515: 187645-187976 , PASA_asmbl_33518: 191899-192527 , PASA_asmbl_33519: 193235-193441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_190 0.0 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
2 Hb_007813_040 0.0754771617 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
3 Hb_002620_010 0.0911977865 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
4 Hb_007982_080 0.0978446197 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
5 Hb_012508_030 0.0980371638 - - PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
6 Hb_002950_100 0.1011270547 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
7 Hb_000010_400 0.1018841201 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
8 Hb_000185_070 0.1044343178 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003528_010 0.1067362352 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
10 Hb_002197_020 0.107880427 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
11 Hb_000061_470 0.1099895395 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
12 Hb_000853_430 0.1106242581 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
13 Hb_000771_120 0.111845135 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
14 Hb_000302_270 0.1146348782 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
15 Hb_000181_110 0.1150795166 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
16 Hb_004204_170 0.1157008446 - - synaptosomal associated protein, putative [Ricinus communis]
17 Hb_003862_050 0.1158795845 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
18 Hb_001981_030 0.1162447106 - - nuclear acid binding protein, putative [Ricinus communis]
19 Hb_002600_020 0.1168480497 - - unnamed protein product [Vitis vinifera]
20 Hb_004800_250 0.1174765574 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]

Gene co-expression network

sample Hb_000318_190 Hb_000318_190 Hb_007813_040 Hb_007813_040 Hb_000318_190--Hb_007813_040 Hb_002620_010 Hb_002620_010 Hb_000318_190--Hb_002620_010 Hb_007982_080 Hb_007982_080 Hb_000318_190--Hb_007982_080 Hb_012508_030 Hb_012508_030 Hb_000318_190--Hb_012508_030 Hb_002950_100 Hb_002950_100 Hb_000318_190--Hb_002950_100 Hb_000010_400 Hb_000010_400 Hb_000318_190--Hb_000010_400 Hb_007813_040--Hb_000010_400 Hb_003862_050 Hb_003862_050 Hb_007813_040--Hb_003862_050 Hb_007813_040--Hb_002620_010 Hb_000175_460 Hb_000175_460 Hb_007813_040--Hb_000175_460 Hb_000629_010 Hb_000629_010 Hb_007813_040--Hb_000629_010 Hb_000808_270 Hb_000808_270 Hb_002620_010--Hb_000808_270 Hb_003175_010 Hb_003175_010 Hb_002620_010--Hb_003175_010 Hb_143629_210 Hb_143629_210 Hb_002620_010--Hb_143629_210 Hb_000030_300 Hb_000030_300 Hb_002620_010--Hb_000030_300 Hb_073973_130 Hb_073973_130 Hb_007982_080--Hb_073973_130 Hb_020367_050 Hb_020367_050 Hb_007982_080--Hb_020367_050 Hb_002197_020 Hb_002197_020 Hb_007982_080--Hb_002197_020 Hb_005288_150 Hb_005288_150 Hb_007982_080--Hb_005288_150 Hb_000185_070 Hb_000185_070 Hb_007982_080--Hb_000185_070 Hb_027428_010 Hb_027428_010 Hb_007982_080--Hb_027428_010 Hb_000359_020 Hb_000359_020 Hb_012508_030--Hb_000359_020 Hb_019654_100 Hb_019654_100 Hb_012508_030--Hb_019654_100 Hb_012508_030--Hb_003862_050 Hb_001934_030 Hb_001934_030 Hb_012508_030--Hb_001934_030 Hb_001439_150 Hb_001439_150 Hb_012508_030--Hb_001439_150 Hb_000521_320 Hb_000521_320 Hb_002950_100--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_002950_100--Hb_000302_270 Hb_002950_100--Hb_000010_400 Hb_002950_100--Hb_007813_040 Hb_000031_060 Hb_000031_060 Hb_002950_100--Hb_000031_060 Hb_008246_040 Hb_008246_040 Hb_002950_100--Hb_008246_040 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000010_400--Hb_000521_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74189 1.90525 3.18061 1.30429 2.73236 1.92398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33914 2.32697 3.42318 2.17107 0.505515

CAGE analysis