Hb_002620_010

Information

Type -
Description -
Location Contig2620: 21487-29603
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18130g
description POPTRDRAFT_818199; hypothetical protein
nr
ID XP_002306184.2
description hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
swissprot
ID O22468
description WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1
trembl
ID B9H1A2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18130g PE=4 SV=2
Gene Ontology
ID GO:0004402
description wd-40 repeat-containing protein msi3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27404: 21576-29582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002620_010 0.0 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
2 Hb_007813_040 0.0709761017 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
3 Hb_000808_270 0.0868062459 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
4 Hb_000318_190 0.0911977865 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
5 Hb_003175_010 0.0942116442 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
6 Hb_143629_210 0.0944560381 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
7 Hb_000030_300 0.0973242394 - - Thioredoxin, putative [Ricinus communis]
8 Hb_000926_280 0.0981711936 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
9 Hb_000061_370 0.0987966971 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
10 Hb_000579_140 0.0999168136 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001677_210 0.1005643211 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
12 Hb_000629_010 0.1016529681 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
13 Hb_032208_090 0.1031497914 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
14 Hb_006827_020 0.1053448042 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002530_030 0.1064297656 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
16 Hb_004046_050 0.1064905185 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
17 Hb_001758_100 0.1067665477 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
18 Hb_000016_250 0.1076180398 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
19 Hb_000010_400 0.1078578034 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
20 Hb_000504_140 0.1078669158 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002620_010 Hb_002620_010 Hb_007813_040 Hb_007813_040 Hb_002620_010--Hb_007813_040 Hb_000808_270 Hb_000808_270 Hb_002620_010--Hb_000808_270 Hb_000318_190 Hb_000318_190 Hb_002620_010--Hb_000318_190 Hb_003175_010 Hb_003175_010 Hb_002620_010--Hb_003175_010 Hb_143629_210 Hb_143629_210 Hb_002620_010--Hb_143629_210 Hb_000030_300 Hb_000030_300 Hb_002620_010--Hb_000030_300 Hb_000010_400 Hb_000010_400 Hb_007813_040--Hb_000010_400 Hb_003862_050 Hb_003862_050 Hb_007813_040--Hb_003862_050 Hb_000175_460 Hb_000175_460 Hb_007813_040--Hb_000175_460 Hb_007813_040--Hb_000318_190 Hb_000629_010 Hb_000629_010 Hb_007813_040--Hb_000629_010 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_000808_270--Hb_003175_010 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_000808_270--Hb_143629_210 Hb_000808_270--Hb_000629_010 Hb_007982_080 Hb_007982_080 Hb_000318_190--Hb_007982_080 Hb_012508_030 Hb_012508_030 Hb_000318_190--Hb_012508_030 Hb_002950_100 Hb_002950_100 Hb_000318_190--Hb_002950_100 Hb_000318_190--Hb_000010_400 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_003464_050 Hb_003464_050 Hb_143629_210--Hb_003464_050 Hb_004032_150 Hb_004032_150 Hb_143629_210--Hb_004032_150 Hb_000618_040 Hb_000618_040 Hb_143629_210--Hb_000618_040 Hb_000010_330 Hb_000010_330 Hb_143629_210--Hb_000010_330 Hb_000451_010 Hb_000451_010 Hb_143629_210--Hb_000451_010 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000030_300--Hb_000808_270 Hb_000030_300--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5282 10.7851 15.1728 8.00034 19.0401 19.5358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5958 14.8812 20.459 12.3571 3.32573

CAGE analysis