Hb_000749_270

Information

Type -
Description -
Location Contig749: 273374-280982
Sequence    

Annotation

kegg
ID rcu:RCOM_0252870
description WD-repeat protein, putative
nr
ID XP_012084919.1
description PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
swissprot
ID Q498F0
description WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1
trembl
ID A0A067K5C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20959 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56807: 273530-280454 , PASA_asmbl_56808: 273404-280454 , PASA_asmbl_56809: 280478-280622 , PASA_asmbl_56810: 280651-280789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_270 0.0 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
2 Hb_004078_040 0.0879877387 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
3 Hb_001799_210 0.0889391709 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
4 Hb_000925_130 0.0907537122 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
5 Hb_000465_160 0.0930551308 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
6 Hb_009339_030 0.0937411544 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
7 Hb_000393_020 0.0985003404 - - lipid binding protein, putative [Ricinus communis]
8 Hb_008246_060 0.1018158435 - - hypothetical protein F383_01577 [Gossypium arboreum]
9 Hb_001300_150 0.1034811931 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
10 Hb_004696_080 0.1051278017 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
11 Hb_000345_310 0.1056441937 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
12 Hb_000096_010 0.1059137594 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
13 Hb_000260_030 0.1084134413 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
14 Hb_000003_250 0.1091947248 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_000454_090 0.1092679608 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
16 Hb_001936_010 0.1093158722 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
17 Hb_050514_010 0.1109825929 - - hypothetical protein 29 [Hevea brasiliensis]
18 Hb_003992_170 0.1112666674 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
19 Hb_119600_070 0.1123367727 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
20 Hb_002809_050 0.1124460819 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_270 Hb_000749_270 Hb_004078_040 Hb_004078_040 Hb_000749_270--Hb_004078_040 Hb_001799_210 Hb_001799_210 Hb_000749_270--Hb_001799_210 Hb_000925_130 Hb_000925_130 Hb_000749_270--Hb_000925_130 Hb_000465_160 Hb_000465_160 Hb_000749_270--Hb_000465_160 Hb_009339_030 Hb_009339_030 Hb_000749_270--Hb_009339_030 Hb_000393_020 Hb_000393_020 Hb_000749_270--Hb_000393_020 Hb_000359_060 Hb_000359_060 Hb_004078_040--Hb_000359_060 Hb_004078_040--Hb_000393_020 Hb_000173_410 Hb_000173_410 Hb_004078_040--Hb_000173_410 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_000454_090 Hb_000454_090 Hb_004078_040--Hb_000454_090 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070 Hb_001799_210--Hb_000465_160 Hb_001009_270 Hb_001009_270 Hb_001799_210--Hb_001009_270 Hb_000003_250 Hb_000003_250 Hb_001799_210--Hb_000003_250 Hb_003177_030 Hb_003177_030 Hb_001799_210--Hb_003177_030 Hb_032208_090 Hb_032208_090 Hb_001799_210--Hb_032208_090 Hb_011344_210 Hb_011344_210 Hb_001799_210--Hb_011344_210 Hb_000288_030 Hb_000288_030 Hb_000925_130--Hb_000288_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000925_130--Hb_000928_070 Hb_000349_260 Hb_000349_260 Hb_000925_130--Hb_000349_260 Hb_000345_310 Hb_000345_310 Hb_000925_130--Hb_000345_310 Hb_000375_350 Hb_000375_350 Hb_000925_130--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000465_160--Hb_001300_150 Hb_000465_160--Hb_001009_270 Hb_000260_030 Hb_000260_030 Hb_000465_160--Hb_000260_030 Hb_000465_160--Hb_003177_030 Hb_004109_170 Hb_004109_170 Hb_000465_160--Hb_004109_170 Hb_000436_130 Hb_000436_130 Hb_009339_030--Hb_000436_130 Hb_001013_030 Hb_001013_030 Hb_009339_030--Hb_001013_030 Hb_009339_030--Hb_000288_030 Hb_050514_010 Hb_050514_010 Hb_009339_030--Hb_050514_010 Hb_007416_060 Hb_007416_060 Hb_009339_030--Hb_007416_060 Hb_000827_050 Hb_000827_050 Hb_009339_030--Hb_000827_050 Hb_004117_260 Hb_004117_260 Hb_000393_020--Hb_004117_260 Hb_000393_020--Hb_000349_260 Hb_000393_020--Hb_001300_150 Hb_000393_020--Hb_000928_070 Hb_001314_070 Hb_001314_070 Hb_000393_020--Hb_001314_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9259 10.2027 13.4719 22.3182 13.847 10.3749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8225 18.2331 34.8834 8.47383 12.4205

CAGE analysis