Hb_000690_120

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig690: 148159-150813
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016027mg
description hypothetical protein
nr
ID CDP19403.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068VIA4
description Coffea canephora DH200=94 genomic scaffold, scaffold_469 OS=Coffea canephora GN=GSCOC_T00008031001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_120 0.0 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
2 Hb_106552_040 0.2557255004 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_290 0.2757631296 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
4 Hb_000078_080 0.2798353903 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_17040 [Jatropha curcas]
5 Hb_008803_040 0.280053927 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
6 Hb_001863_020 0.2835631017 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
7 Hb_000310_100 0.2841296926 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004346_030 0.2844618867 - - sucrose phosphate phosphatase, putative [Ricinus communis]
9 Hb_000827_060 0.2853454786 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
10 Hb_000422_120 0.2854053311 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
11 Hb_069696_010 0.2881827386 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
12 Hb_008725_170 0.2896672322 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
13 Hb_000525_050 0.2903088925 - - conserved hypothetical protein [Ricinus communis]
14 Hb_181026_010 0.2916669828 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
15 Hb_006816_470 0.2919539496 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
16 Hb_001008_180 0.2921787802 - - -
17 Hb_001059_170 0.2928908477 - - hexose transporter 1 [Hevea brasiliensis]
18 Hb_012368_010 0.2935091031 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
19 Hb_000062_100 0.2980928635 - - -
20 Hb_011386_020 0.2981076367 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000690_120 Hb_000690_120 Hb_106552_040 Hb_106552_040 Hb_000690_120--Hb_106552_040 Hb_000329_290 Hb_000329_290 Hb_000690_120--Hb_000329_290 Hb_000078_080 Hb_000078_080 Hb_000690_120--Hb_000078_080 Hb_008803_040 Hb_008803_040 Hb_000690_120--Hb_008803_040 Hb_001863_020 Hb_001863_020 Hb_000690_120--Hb_001863_020 Hb_000310_100 Hb_000310_100 Hb_000690_120--Hb_000310_100 Hb_106552_040--Hb_000310_100 Hb_006903_030 Hb_006903_030 Hb_106552_040--Hb_006903_030 Hb_025466_010 Hb_025466_010 Hb_106552_040--Hb_025466_010 Hb_012244_010 Hb_012244_010 Hb_106552_040--Hb_012244_010 Hb_121881_010 Hb_121881_010 Hb_106552_040--Hb_121881_010 Hb_007441_080 Hb_007441_080 Hb_106552_040--Hb_007441_080 Hb_000482_040 Hb_000482_040 Hb_000329_290--Hb_000482_040 Hb_032202_040 Hb_032202_040 Hb_000329_290--Hb_032202_040 Hb_009615_120 Hb_009615_120 Hb_000329_290--Hb_009615_120 Hb_001195_450 Hb_001195_450 Hb_000329_290--Hb_001195_450 Hb_001226_140 Hb_001226_140 Hb_000329_290--Hb_001226_140 Hb_001723_060 Hb_001723_060 Hb_000329_290--Hb_001723_060 Hb_009486_040 Hb_009486_040 Hb_000078_080--Hb_009486_040 Hb_000230_290 Hb_000230_290 Hb_000078_080--Hb_000230_290 Hb_000705_250 Hb_000705_250 Hb_000078_080--Hb_000705_250 Hb_003025_140 Hb_003025_140 Hb_000078_080--Hb_003025_140 Hb_001393_010 Hb_001393_010 Hb_000078_080--Hb_001393_010 Hb_011224_100 Hb_011224_100 Hb_000078_080--Hb_011224_100 Hb_008803_040--Hb_000705_250 Hb_003186_040 Hb_003186_040 Hb_008803_040--Hb_003186_040 Hb_026698_030 Hb_026698_030 Hb_008803_040--Hb_026698_030 Hb_000404_040 Hb_000404_040 Hb_008803_040--Hb_000404_040 Hb_000022_140 Hb_000022_140 Hb_008803_040--Hb_000022_140 Hb_173808_010 Hb_173808_010 Hb_008803_040--Hb_173808_010 Hb_001138_060 Hb_001138_060 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_001399_010 Hb_001399_010 Hb_001863_020--Hb_001399_010 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_042202_060 Hb_042202_060 Hb_001863_020--Hb_042202_060 Hb_005167_020 Hb_005167_020 Hb_001863_020--Hb_005167_020 Hb_011861_100 Hb_011861_100 Hb_000310_100--Hb_011861_100 Hb_000310_100--Hb_025466_010 Hb_001153_120 Hb_001153_120 Hb_000310_100--Hb_001153_120 Hb_000310_100--Hb_012244_010 Hb_027073_010 Hb_027073_010 Hb_000310_100--Hb_027073_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.011276 0.00750418 0.020241 0.0262588 0 0.0173469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0413312 0 0.0926966 0.0193937 0.068884

CAGE analysis