Hb_069251_010

Information

Type -
Description -
Location Contig69251: 2759-5724
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069251_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_001780_120 0.207415744 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
3 Hb_020334_010 0.2206031539 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_010080_080 0.2336974207 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003294_100 0.2391183528 - - hypothetical protein VITISV_009629 [Vitis vinifera]
6 Hb_029510_040 0.2420982298 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
7 Hb_001357_010 0.2452074257 - - -
8 Hb_026239_010 0.2516632948 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_005839_110 0.2565577408 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
10 Hb_000616_040 0.2579895906 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
11 Hb_001294_010 0.2607846693 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
12 Hb_000316_020 0.2634984684 - - protein binding protein, putative [Ricinus communis]
13 Hb_000771_130 0.2658497602 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_004734_050 0.2660218833 - - -
15 Hb_001114_050 0.2685380303 - - hypothetical protein RCOM_0744580 [Ricinus communis]
16 Hb_000853_410 0.2695589154 - - -
17 Hb_000283_080 0.2713311661 - - -
18 Hb_000454_070 0.2719873685 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
19 Hb_000479_080 0.2724247018 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_003117_010 0.2729269321 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_069251_010 Hb_069251_010 Hb_001780_120 Hb_001780_120 Hb_069251_010--Hb_001780_120 Hb_020334_010 Hb_020334_010 Hb_069251_010--Hb_020334_010 Hb_010080_080 Hb_010080_080 Hb_069251_010--Hb_010080_080 Hb_003294_100 Hb_003294_100 Hb_069251_010--Hb_003294_100 Hb_029510_040 Hb_029510_040 Hb_069251_010--Hb_029510_040 Hb_001357_010 Hb_001357_010 Hb_069251_010--Hb_001357_010 Hb_001523_020 Hb_001523_020 Hb_001780_120--Hb_001523_020 Hb_119504_010 Hb_119504_010 Hb_001780_120--Hb_119504_010 Hb_001222_050 Hb_001222_050 Hb_001780_120--Hb_001222_050 Hb_001035_070 Hb_001035_070 Hb_001780_120--Hb_001035_070 Hb_000422_120 Hb_000422_120 Hb_001780_120--Hb_000422_120 Hb_004553_020 Hb_004553_020 Hb_001780_120--Hb_004553_020 Hb_026239_010 Hb_026239_010 Hb_020334_010--Hb_026239_010 Hb_011484_010 Hb_011484_010 Hb_020334_010--Hb_011484_010 Hb_020334_010--Hb_001357_010 Hb_020334_010--Hb_029510_040 Hb_061802_010 Hb_061802_010 Hb_020334_010--Hb_061802_010 Hb_000563_550 Hb_000563_550 Hb_010080_080--Hb_000563_550 Hb_005043_010 Hb_005043_010 Hb_010080_080--Hb_005043_010 Hb_000172_560 Hb_000172_560 Hb_010080_080--Hb_000172_560 Hb_003475_010 Hb_003475_010 Hb_010080_080--Hb_003475_010 Hb_000865_060 Hb_000865_060 Hb_010080_080--Hb_000865_060 Hb_005701_010 Hb_005701_010 Hb_010080_080--Hb_005701_010 Hb_001294_010 Hb_001294_010 Hb_003294_100--Hb_001294_010 Hb_003117_010 Hb_003117_010 Hb_003294_100--Hb_003117_010 Hb_009393_210 Hb_009393_210 Hb_003294_100--Hb_009393_210 Hb_000648_020 Hb_000648_020 Hb_003294_100--Hb_000648_020 Hb_012490_050 Hb_012490_050 Hb_003294_100--Hb_012490_050 Hb_001014_230 Hb_001014_230 Hb_003294_100--Hb_001014_230 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_002756_020 Hb_002756_020 Hb_029510_040--Hb_002756_020 Hb_029510_040--Hb_001357_010 Hb_001189_050 Hb_001189_050 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190 Hb_001357_010--Hb_001294_010 Hb_001357_010--Hb_001189_050 Hb_092107_010 Hb_092107_010 Hb_001357_010--Hb_092107_010 Hb_011030_020 Hb_011030_020 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00600945 0 0 0.00682853 0.0136527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0331084 0.026053 0.0745902 0.0206827 0.0277259

CAGE analysis