Hb_001842_110

Information

Type transcription factor
Description TF Family: ERF
Location Contig1842: 153682-154380
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14990g
description POPTRDRAFT_875242; hypothetical protein
nr
ID XP_002532187.1
description CBF-like transcription factor, putative [Ricinus communis]
swissprot
ID Q9FJ93
description Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1
trembl
ID B9T1R8
description CBF-like transcription factor, putative OS=Ricinus communis GN=RCOM_2160420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_110 0.0 transcription factor TF Family: ERF CBF-like transcription factor, putative [Ricinus communis]
2 Hb_000236_330 0.198231189 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
3 Hb_000890_180 0.2497489055 - - glutaredoxin, grx, putative [Ricinus communis]
4 Hb_012150_060 0.2689567634 - - -
5 Hb_003540_220 0.2704780509 - - PREDICTED: thioredoxin [Jatropha curcas]
6 Hb_006501_140 0.3324382846 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
7 Hb_032718_010 0.3351304983 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_027010_030 0.3371511971 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_000345_110 0.3497820507 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
10 Hb_000035_420 0.3537398397 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
11 Hb_004846_150 0.3546005286 - - hypothetical protein JCGZ_26968 [Jatropha curcas]
12 Hb_000805_220 0.3579435102 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_007137_020 0.3660017464 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_105814_020 0.3702019537 - - berberine bridge enzyme [Hevea brasiliensis]
15 Hb_002890_350 0.3712237131 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_009403_010 0.3713863147 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_000626_040 0.3714073312 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
18 Hb_100526_020 0.3729076296 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
19 Hb_000930_020 0.3761759268 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
20 Hb_004730_010 0.3789270642 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]

Gene co-expression network

sample Hb_001842_110 Hb_001842_110 Hb_000236_330 Hb_000236_330 Hb_001842_110--Hb_000236_330 Hb_000890_180 Hb_000890_180 Hb_001842_110--Hb_000890_180 Hb_012150_060 Hb_012150_060 Hb_001842_110--Hb_012150_060 Hb_003540_220 Hb_003540_220 Hb_001842_110--Hb_003540_220 Hb_006501_140 Hb_006501_140 Hb_001842_110--Hb_006501_140 Hb_032718_010 Hb_032718_010 Hb_001842_110--Hb_032718_010 Hb_000236_330--Hb_000890_180 Hb_000035_420 Hb_000035_420 Hb_000236_330--Hb_000035_420 Hb_000236_330--Hb_012150_060 Hb_002341_040 Hb_002341_040 Hb_000236_330--Hb_002341_040 Hb_003867_030 Hb_003867_030 Hb_000236_330--Hb_003867_030 Hb_000890_180--Hb_032718_010 Hb_062447_010 Hb_062447_010 Hb_000890_180--Hb_062447_010 Hb_001123_250 Hb_001123_250 Hb_000890_180--Hb_001123_250 Hb_003159_150 Hb_003159_150 Hb_000890_180--Hb_003159_150 Hb_014879_010 Hb_014879_010 Hb_012150_060--Hb_014879_010 Hb_182750_010 Hb_182750_010 Hb_012150_060--Hb_182750_010 Hb_001206_010 Hb_001206_010 Hb_012150_060--Hb_001206_010 Hb_153258_020 Hb_153258_020 Hb_012150_060--Hb_153258_020 Hb_005054_170 Hb_005054_170 Hb_003540_220--Hb_005054_170 Hb_007802_010 Hb_007802_010 Hb_003540_220--Hb_007802_010 Hb_003540_220--Hb_032718_010 Hb_000342_120 Hb_000342_120 Hb_003540_220--Hb_000342_120 Hb_020817_030 Hb_020817_030 Hb_003540_220--Hb_020817_030 Hb_000805_220 Hb_000805_220 Hb_006501_140--Hb_000805_220 Hb_100526_020 Hb_100526_020 Hb_006501_140--Hb_100526_020 Hb_000930_020 Hb_000930_020 Hb_006501_140--Hb_000930_020 Hb_105814_020 Hb_105814_020 Hb_006501_140--Hb_105814_020 Hb_003145_030 Hb_003145_030 Hb_006501_140--Hb_003145_030 Hb_000974_030 Hb_000974_030 Hb_006501_140--Hb_000974_030 Hb_027010_030 Hb_027010_030 Hb_032718_010--Hb_027010_030 Hb_026698_030 Hb_026698_030 Hb_032718_010--Hb_026698_030 Hb_007237_010 Hb_007237_010 Hb_032718_010--Hb_007237_010 Hb_004846_150 Hb_004846_150 Hb_032718_010--Hb_004846_150 Hb_034507_010 Hb_034507_010 Hb_032718_010--Hb_034507_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.467786 0 0.19805 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.227393 0 0.252039

CAGE analysis