Hb_003540_220

Information

Type -
Description -
Location Contig3540: 124640-124948
Sequence    

Annotation

kegg
ID rcu:RCOM_1209610
description thioredoxin m(mitochondrial)-type, putative
nr
ID XP_012084948.1
description PREDICTED: thioredoxin [Jatropha curcas]
swissprot
ID P48384
description Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067K464
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20980 PE=4 SV=1
Gene Ontology
ID GO:0005618
description thioredoxin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_220 0.0 - - PREDICTED: thioredoxin [Jatropha curcas]
2 Hb_005054_170 0.254648263 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
3 Hb_007802_010 0.2605513815 - - Receptor like protein 6, putative [Theobroma cacao]
4 Hb_032718_010 0.2625928265 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_000342_120 0.2673294674 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
6 Hb_001842_110 0.2704780509 transcription factor TF Family: ERF CBF-like transcription factor, putative [Ricinus communis]
7 Hb_020817_030 0.2732824171 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_001496_110 0.2762172474 - - hypothetical protein VITISV_044023 [Vitis vinifera]
9 Hb_007027_010 0.2789107752 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
10 Hb_062479_010 0.2837475575 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
11 Hb_004218_290 0.286250207 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
12 Hb_001907_050 0.2873194176 - - Receptor like protein 6, putative [Theobroma cacao]
13 Hb_000062_640 0.2875244988 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
14 Hb_000016_150 0.2892497862 - - PREDICTED: uncharacterized protein LOC105137629 [Populus euphratica]
15 Hb_004846_150 0.2941832016 - - hypothetical protein JCGZ_26968 [Jatropha curcas]
16 Hb_001123_250 0.2942960558 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
17 Hb_003952_130 0.2951976316 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
18 Hb_007137_020 0.2952877277 - - multicopper oxidase, putative [Ricinus communis]
19 Hb_002973_030 0.2961123129 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_000041_160 0.2985951136 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_003540_220 Hb_003540_220 Hb_005054_170 Hb_005054_170 Hb_003540_220--Hb_005054_170 Hb_007802_010 Hb_007802_010 Hb_003540_220--Hb_007802_010 Hb_032718_010 Hb_032718_010 Hb_003540_220--Hb_032718_010 Hb_000342_120 Hb_000342_120 Hb_003540_220--Hb_000342_120 Hb_001842_110 Hb_001842_110 Hb_003540_220--Hb_001842_110 Hb_020817_030 Hb_020817_030 Hb_003540_220--Hb_020817_030 Hb_000062_640 Hb_000062_640 Hb_005054_170--Hb_000062_640 Hb_000028_340 Hb_000028_340 Hb_005054_170--Hb_000028_340 Hb_002027_170 Hb_002027_170 Hb_005054_170--Hb_002027_170 Hb_062479_010 Hb_062479_010 Hb_005054_170--Hb_062479_010 Hb_000056_280 Hb_000056_280 Hb_005054_170--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_005054_170--Hb_000025_400 Hb_000899_060 Hb_000899_060 Hb_007802_010--Hb_000899_060 Hb_037684_010 Hb_037684_010 Hb_007802_010--Hb_037684_010 Hb_000956_100 Hb_000956_100 Hb_007802_010--Hb_000956_100 Hb_007802_010--Hb_020817_030 Hb_000325_010 Hb_000325_010 Hb_007802_010--Hb_000325_010 Hb_000245_100 Hb_000245_100 Hb_007802_010--Hb_000245_100 Hb_027010_030 Hb_027010_030 Hb_032718_010--Hb_027010_030 Hb_026698_030 Hb_026698_030 Hb_032718_010--Hb_026698_030 Hb_007237_010 Hb_007237_010 Hb_032718_010--Hb_007237_010 Hb_004846_150 Hb_004846_150 Hb_032718_010--Hb_004846_150 Hb_034507_010 Hb_034507_010 Hb_032718_010--Hb_034507_010 Hb_000890_180 Hb_000890_180 Hb_032718_010--Hb_000890_180 Hb_001496_110 Hb_001496_110 Hb_000342_120--Hb_001496_110 Hb_004730_010 Hb_004730_010 Hb_000342_120--Hb_004730_010 Hb_002004_010 Hb_002004_010 Hb_000342_120--Hb_002004_010 Hb_005588_130 Hb_005588_130 Hb_000342_120--Hb_005588_130 Hb_020301_010 Hb_020301_010 Hb_000342_120--Hb_020301_010 Hb_000041_160 Hb_000041_160 Hb_000342_120--Hb_000041_160 Hb_000236_330 Hb_000236_330 Hb_001842_110--Hb_000236_330 Hb_001842_110--Hb_000890_180 Hb_012150_060 Hb_012150_060 Hb_001842_110--Hb_012150_060 Hb_006501_140 Hb_006501_140 Hb_001842_110--Hb_006501_140 Hb_001842_110--Hb_032718_010 Hb_020817_030--Hb_037684_010 Hb_020817_030--Hb_000899_060 Hb_002053_170 Hb_002053_170 Hb_020817_030--Hb_002053_170 Hb_001907_050 Hb_001907_050 Hb_020817_030--Hb_001907_050 Hb_011470_010 Hb_011470_010 Hb_020817_030--Hb_011470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14606 1.42846 0 1.19849 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.395294 0.252873 0.8598

CAGE analysis