Hb_000101_260

Information

Type -
Description -
Location Contig101: 285963-289155
Sequence    

Annotation

kegg
ID rcu:RCOM_0592990
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002526891.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9SHI2
description Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2
trembl
ID B9SLM2
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0592990 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_260 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000711_020 0.2689760423 - - major allergen Pru ar 1-like [Jatropha curcas]
3 Hb_012338_030 0.2906372483 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001206_010 0.2954149979 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_014879_010 0.3150963332 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_001660_020 0.3224339148 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
7 Hb_010874_040 0.3290997127 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
8 Hb_006569_050 0.3320873753 - - -
9 Hb_000640_030 0.3421710092 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_004570_030 0.3425052824 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005137_030 0.3428375736 - - conserved hypothetical protein [Ricinus communis]
12 Hb_146339_010 0.3432025426 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
13 Hb_002805_130 0.3468254486 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000959_090 0.3545447159 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001106_050 0.354830413 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_007064_010 0.3587450506 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
17 Hb_000032_470 0.3600472324 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
18 Hb_000042_140 0.3659636892 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
19 Hb_003349_100 0.3667417093 - - conserved hypothetical protein [Ricinus communis]
20 Hb_062482_010 0.3688464156 - - -

Gene co-expression network

sample Hb_000101_260 Hb_000101_260 Hb_000711_020 Hb_000711_020 Hb_000101_260--Hb_000711_020 Hb_012338_030 Hb_012338_030 Hb_000101_260--Hb_012338_030 Hb_001206_010 Hb_001206_010 Hb_000101_260--Hb_001206_010 Hb_014879_010 Hb_014879_010 Hb_000101_260--Hb_014879_010 Hb_001660_020 Hb_001660_020 Hb_000101_260--Hb_001660_020 Hb_010874_040 Hb_010874_040 Hb_000101_260--Hb_010874_040 Hb_014548_030 Hb_014548_030 Hb_000711_020--Hb_014548_030 Hb_012305_090 Hb_012305_090 Hb_000711_020--Hb_012305_090 Hb_006569_050 Hb_006569_050 Hb_000711_020--Hb_006569_050 Hb_049275_010 Hb_049275_010 Hb_000711_020--Hb_049275_010 Hb_001446_010 Hb_001446_010 Hb_000711_020--Hb_001446_010 Hb_086607_010 Hb_086607_010 Hb_000711_020--Hb_086607_010 Hb_003805_060 Hb_003805_060 Hb_012338_030--Hb_003805_060 Hb_146339_010 Hb_146339_010 Hb_012338_030--Hb_146339_010 Hb_000959_090 Hb_000959_090 Hb_012338_030--Hb_000959_090 Hb_001912_080 Hb_001912_080 Hb_012338_030--Hb_001912_080 Hb_003805_070 Hb_003805_070 Hb_012338_030--Hb_003805_070 Hb_012338_030--Hb_000711_020 Hb_001206_010--Hb_014879_010 Hb_000172_130 Hb_000172_130 Hb_001206_010--Hb_000172_130 Hb_024411_010 Hb_024411_010 Hb_001206_010--Hb_024411_010 Hb_057451_040 Hb_057451_040 Hb_001206_010--Hb_057451_040 Hb_038044_020 Hb_038044_020 Hb_001206_010--Hb_038044_020 Hb_001062_020 Hb_001062_020 Hb_001206_010--Hb_001062_020 Hb_012150_060 Hb_012150_060 Hb_014879_010--Hb_012150_060 Hb_025236_030 Hb_025236_030 Hb_014879_010--Hb_025236_030 Hb_014879_010--Hb_000172_130 Hb_004981_010 Hb_004981_010 Hb_014879_010--Hb_004981_010 Hb_004724_230 Hb_004724_230 Hb_001660_020--Hb_004724_230 Hb_184520_010 Hb_184520_010 Hb_001660_020--Hb_184520_010 Hb_006268_020 Hb_006268_020 Hb_001660_020--Hb_006268_020 Hb_000422_120 Hb_000422_120 Hb_001660_020--Hb_000422_120 Hb_055101_010 Hb_055101_010 Hb_001660_020--Hb_055101_010 Hb_007064_010 Hb_007064_010 Hb_001660_020--Hb_007064_010 Hb_004228_020 Hb_004228_020 Hb_010874_040--Hb_004228_020 Hb_009898_010 Hb_009898_010 Hb_010874_040--Hb_009898_010 Hb_001268_380 Hb_001268_380 Hb_010874_040--Hb_001268_380 Hb_005486_030 Hb_005486_030 Hb_010874_040--Hb_005486_030 Hb_011716_030 Hb_011716_030 Hb_010874_040--Hb_011716_030 Hb_002780_010 Hb_002780_010 Hb_010874_040--Hb_002780_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0286964 0.00460476 0 0.0124559 0.022386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0424956 0.00440296 0.0236999

CAGE analysis